Locus 6135

Sequence ID 2L_DroMel_CAF1
Location 17,132,344 – 17,132,463
Length 119
Max. P 0.868915
window9791

overview

Window 1

Location 17,132,344 – 17,132,463
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.47
Mean single sequence MFE -31.06
Consensus MFE -28.88
Energy contribution -28.76
Covariance contribution -0.12
Combinations/Pair 1.06
Mean z-score -1.30
Structure conservation index 0.93
SVM decision value 0.86
SVM RNA-class probability 0.868915
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17132344 119 - 22407834
CAAAGUGGGGG-AAAAAACACUUAGCCACACAGAGACUCAGUCGCUUUGGCCAUUGCGGCGACACAGUUUUAUUUAAACAUACAUUUAAGCAUACUUGAGCUUAUGCUCAGCUUGCCGGC
..(((((....-......))))).(((.....((((((..((((((...((....))))))))..))))))..................(((...((((((....))))))..))).))) ( -31.30)
>DroSec_CAF1 100843 113 - 1
CAAAGUGGGGG-AAAAAACACUUAGCCACACAGAGACUCAGUUGCUUUGGCCAUUGCGGCGACACAGUUUUAUUUAAACAA------AAGCAUAAUUGAGCUUAUGCUCAGUUUGCCGGC
..(((((....-......))))).(((.....((((((..((((((...((....))))))))..))))))..........------..(((.((((((((....))))))))))).))) ( -31.60)
>DroSim_CAF1 112738 113 - 1
CAAAGUGGAGG-AAAAAACACUUAGCCACACAGAGACUCAGUUGCUUUGGCCAUUGCGGCGACACAGUUUUAUUUAAACAA------AAGCAUACUUGAGCUUAUGCUCAGUUUGCCGGC
..(((((....-......))))).(((.....((((((..((((((...((....))))))))..))))))..........------..(((.(((.((((....))))))).))).))) ( -30.60)
>DroEre_CAF1 98487 114 - 1
CAAAGUGGGGGAAAAAAACACUUAGCCACACAGAGACUCAGUUGCUUUGGCCAUUGCGGCGACACAGUUUUAUUUAAACAA------AAGCAUACUUGAGCUUAUGCUCAGUUUGCCGGC
..(((((...........))))).(((.....((((((..((((((...((....))))))))..))))))..........------..(((.(((.((((....))))))).))).))) ( -30.50)
>DroYak_CAF1 100846 112 - 1
CAAGGUGGGG--AAAAAACACUUAGCCACACAGAGACUCAGUUGCUUUGGCCGUUGCGGCGCCACAGUUUUAUUUAAACAA------AAGCAUACUUGAGCUUAUGCUCAGUUUGCCGGC
..(((((...--......))))).(((...(((((.(......))))))((....)))))(((...((((.....))))..------..(((.(((.((((....))))))).))).))) ( -31.30)
>consensus
CAAAGUGGGGG_AAAAAACACUUAGCCACACAGAGACUCAGUUGCUUUGGCCAUUGCGGCGACACAGUUUUAUUUAAACAA______AAGCAUACUUGAGCUUAUGCUCAGUUUGCCGGC
..(((((...........))))).(((.....((((((..((((((...((....))))))))..))))))..................(((...((((((....))))))..))).))) (-28.88 = -28.76 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:08 2006