Locus 6134

Sequence ID 2L_DroMel_CAF1
Location 17,131,469 – 17,131,589
Length 120
Max. P 0.999907
window9790

overview

Window 0

Location 17,131,469 – 17,131,589
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.83
Mean single sequence MFE -43.12
Consensus MFE -41.20
Energy contribution -41.40
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -3.12
Structure conservation index 0.96
SVM decision value 4.48
SVM RNA-class probability 0.999907
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17131469 120 + 22407834
UUUUCAUUUUUGGCGCUCUGACUUCGACUCUGGUUGUGGGUCCUGCUUUGCAUGUUAAUACGCUCUUUGAUAUUGCCGAGCAGCGCCUGCAGCCUGAUUGCUUCUGACAGCGUCCCCCGA
...........((((((..((...(((.((.(((((..(((.((((((.(((((((((........)))))).))).)))))).)))..))))).)))))..))....))))))...... ( -42.50)
>DroSec_CAF1 99941 120 + 1
UUUUCAUUUUUGGCGCUCUGACUUCGACUCUGGUUGUGGGUCCUGCUUUGCAUGUUAAUACGCUCUUUGAUAUUGCCGAGCAGCGCCUGCAGCCUGAUUGCUUCUGACAGCGUCCCCCGA
...........((((((..((...(((.((.(((((..(((.((((((.(((((((((........)))))).))).)))))).)))..))))).)))))..))....))))))...... ( -42.50)
>DroSim_CAF1 111868 120 + 1
UUUUCAUUUUUGGCGCUCUGACUUCGACUCUGGUUGUGGGUCCUGCUUUGCAUGUUAAUACGCUCUUUGAUAUUGCCGAGCAGCGCCUGCAGCCUGAUUGCUUCUGACAGCGUCCCCCGA
...........((((((..((...(((.((.(((((..(((.((((((.(((((((((........)))))).))).)))))).)))..))))).)))))..))....))))))...... ( -42.50)
>DroEre_CAF1 97649 120 + 1
UUUUCAGUUUUGGCGCUCUGCCUUCGACUCCGGUUGUGGGUCCUGCUUUGCAUGUUAAUACGCUCUUUGAUAUUGCCGAGCAGCGCCUGCAGCCUGAUUGCUUCUGACAGCGUGCCCCGU
...........(((((.(((.(..(((.((.(((((..(((.((((((.(((((((((........)))))).))).)))))).)))..))))).))))).....).))).))))).... ( -45.60)
>DroYak_CAF1 98056 119 + 1
UUUUCAGUU-UGGCGCUCUGACUUCGACUCUGGUUGUGGGUCCUGCUUUGCAUGUUAAUACGCUCUUUGAUAUUGCCGAGCAGCGCCUGCAGCCUGAUUGCUUCUGACAGCGUCCCCCGA
.........-.((((((..((...(((.((.(((((..(((.((((((.(((((((((........)))))).))).)))))).)))..))))).)))))..))....))))))...... ( -42.50)
>consensus
UUUUCAUUUUUGGCGCUCUGACUUCGACUCUGGUUGUGGGUCCUGCUUUGCAUGUUAAUACGCUCUUUGAUAUUGCCGAGCAGCGCCUGCAGCCUGAUUGCUUCUGACAGCGUCCCCCGA
...........((((((.......(((.((.(((((..(((.((((((.(((((((((........)))))).))).)))))).)))..))))).)))))........))))))...... (-41.20 = -41.40 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:07 2006