Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,127,223 – 17,127,343 |
Length | 120 |
Max. P | 0.995868 |
Location | 17,127,223 – 17,127,343 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.00 |
Mean single sequence MFE | -34.64 |
Consensus MFE | -30.86 |
Energy contribution | -32.08 |
Covariance contribution | 1.22 |
Combinations/Pair | 1.08 |
Mean z-score | -2.22 |
Structure conservation index | 0.89 |
SVM decision value | 2.62 |
SVM RNA-class probability | 0.995868 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17127223 120 + 22407834 UGUGGCGGCAAUAAUAACAAAAACGUAUUCAAUGAAAAUGUGAGCAAGUGCAGGUCGUGGAAAUGAAAAAUCUUUGAGCCCCCGCUCGAAAUGCCGCAUUUGUUGCGUGCCGAAAACAUU (((..(((((............((((.(((...))).)))).(((((((((.((((((....))))......(((((((....)))))))...)))))))))))...)))))...))).. ( -34.60) >DroSec_CAF1 95710 120 + 1 UGUGGCAGCAAUAAUAACAGAAACGUAUUCAAUGAAAAUGUGAGCAAGUGCAGGUCGUGGAAAUGAAAAAUCUUUGAGCCCCCGCUCGAAAUGCCGCAUUUGUUGCGUGCCGAAAACAUU ..(((((((.............((((.(((...))).)))).(((((((((.((((((....))))......(((((((....)))))))...))))))))))))).)))))........ ( -33.40) >DroSim_CAF1 107423 120 + 1 UGUGGCAGCAAUAAUAACAGAAACGUAUUCAAUGAAAAUGUGAGCAAGUGCAGGUCGUGGAAAUGAAAAAUCUUUGAGCCCCCGCUCGAAAUGCCGCAUUUGUUGCGUGCCGAAAACAUU ..(((((((.............((((.(((...))).)))).(((((((((.((((((....))))......(((((((....)))))))...))))))))))))).)))))........ ( -33.40) >DroEre_CAF1 93154 120 + 1 UGUGGCAGCAACAAUAACAAAAACGUAUUCAAUGAAAAUGUGAGCAAGUGCAGGUCCUGGAAAUGAAAAAUCUUUGGGCCCCCGCUCGAAAUGCCGCAUUUGUUGCGUGCCGAGAACAUU ..((((((((((...........(((.....))).(((((((.(((((((..(((((.(((.........)))..)))))..)))).....))))))))))))))).)))))........ ( -35.40) >DroYak_CAF1 93801 120 + 1 UGUGGCAGCAAUAAUAACAAAAACGUAUUCAAUGAAAAUGUGAGCAAGUGCAGGUCGUGGAAAUGAAAAAUCUUUGAGCCCCCGCUCGAAAAGCUGCAUUUGUUGCGUGCCGAGAACAUU ..(((((((.............((((.(((...))).)))).(((((((((((.((((....))))......(((((((....)))))))...))))))))))))).)))))........ ( -36.40) >consensus UGUGGCAGCAAUAAUAACAAAAACGUAUUCAAUGAAAAUGUGAGCAAGUGCAGGUCGUGGAAAUGAAAAAUCUUUGAGCCCCCGCUCGAAAUGCCGCAUUUGUUGCGUGCCGAAAACAUU ..(((((((.............((((.(((...))).)))).(((((((((.((((((....))))......(((((((....)))))))...))))))))))))).)))))........ (-30.86 = -32.08 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:56 2006