Locus 6128

Sequence ID 2L_DroMel_CAF1
Location 17,126,309 – 17,126,421
Length 112
Max. P 0.992618
window9778

overview

Window 8

Location 17,126,309 – 17,126,421
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.58
Mean single sequence MFE -23.56
Consensus MFE -21.68
Energy contribution -21.92
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.76
Structure conservation index 0.92
SVM decision value 2.34
SVM RNA-class probability 0.992618
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17126309 112 - 22407834
UGACUUAACCAAAUUUCAAGGCUAGCGAGGCAAUGCAAUUAAUUUGCACAUUGUUUUCUGGUGCUCAAUUAAACGCCAUUAAACGAAGGACAAAUAAAAUUGUAUAUGCAAA--------
.............................(((((((((((.(((((..(.((((((..(((((..........)))))..)))))).)..)))))..)))))))).)))...-------- ( -23.70)
>DroSec_CAF1 94805 119 - 1
UGACUUAACCAAAUUUCAAGGCUAGCGAGGCAAUGCAAUUAAUUUGCACAUUGUUUUCUGGUGCUCAAUUAAACGCCGUUAAACGAAGGACAAAUAAAAUU-UAUAUGCAAAUAAAUGUA
...........((((.((..(((.....)))..)).)))).(((((..(.((((((..(((((..........)))))..)))))).)..)))))...(((-(((......))))))... ( -18.20)
>DroSim_CAF1 106509 112 - 1
UGACUUAACCAAAUUUCAAGGCUAGCGAGGCAAUGCAAUUAAUUUGCACAUUGUUUUCUGGUGCUCAAUUAAACGCCAUUAAACGAAGGACAAAUAAAAUUGUAUAUGCAAA--------
.............................(((((((((((.(((((..(.((((((..(((((..........)))))..)))))).)..)))))..)))))))).)))...-------- ( -23.70)
>DroEre_CAF1 92246 112 - 1
UGCAUUAACCAAAUUUCAAGGCUAGCGAGGCAAUGCAAUUAAUUUGCACAUUGUUUUCUGGUGUUCAAUUAAACGCCAUUAAACGAAGGACAAAUAAAAUUGUAUAUGCAAA--------
(((((...............(((.....))).((((((((.(((((..(.((((((..(((((((......)))))))..)))))).)..)))))..)))))))))))))..-------- ( -29.50)
>DroYak_CAF1 92896 112 - 1
UGGCUUAACUUAAUUUCAAGGUUAGCGAAGCAAUGCAAUUAAUUUGCACAUUGUUUUCUGGUGCUCAAUUAAACGCCAUUAAACGAAGGACAAAUAAAAUUUUAUAUGCAAA--------
..(((.(((((.......))))))))...((((((.((((.(((((..(.((((((..(((((..........)))))..)))))).)..)))))..)))).))).)))...-------- ( -22.70)
>consensus
UGACUUAACCAAAUUUCAAGGCUAGCGAGGCAAUGCAAUUAAUUUGCACAUUGUUUUCUGGUGCUCAAUUAAACGCCAUUAAACGAAGGACAAAUAAAAUUGUAUAUGCAAA________
.............................(((((((((((.(((((..(.((((((..(((((..........)))))..)))))).)..)))))..)))))))).)))........... (-21.68 = -21.92 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:55 2006