| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,124,688 – 17,124,801 |
| Length | 113 |
| Max. P | 0.516762 |
| Location | 17,124,688 – 17,124,801 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.21 |
| Mean single sequence MFE | -25.84 |
| Consensus MFE | -16.66 |
| Energy contribution | -16.10 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516762 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17124688 113 - 22407834 UAUCAAUACGAAACUGUCGUAUUGUAUUGUUACCCA--UUGAUGGCCUUUAAAGU----AGGCU-CUCUCCACCAAGCUGAAUUUACGUGUGAUAACUUUACGCGCAGCUGUCAUAAAAA ...((((((((.....))))))))..((((.((...--..((.(((((.......----)))))-.)).......(((((......(((((((.....)))))))))))))).))))... ( -28.20) >DroSec_CAF1 88461 113 - 1 UAUCAAUACGAAACUGUCUUACAGCAUUGUUACCCA--UCGAUGGCCUUCAAAGU----AGGCU-CUCUCCACCAAGCUGAAUUUACGUGUGAUAACUUCACGCGCAGCUGUCAUAAAAA .......((((..(((.....)))..))))......--..((.(((((.......----)))))-.)).......(((((......(((((((.....)))))))))))).......... ( -25.60) >DroSim_CAF1 104543 113 - 1 UAUCAAUACGAUACUGUCUUAUAGCAUUGUUACCCA--UCGAUGGCCUUCAAAGU----AGGCU-CUCUCCACCAAGCUGAAUUUACGUGUGAUAACUUCACGCGCAGCUGUCAUAAAAA .........((((((((....((((..((.....))--..((.(((((.......----)))))-.))........)))).......((((((.....)))))))))).))))....... ( -25.50) >DroEre_CAF1 90617 104 - 1 -------ACGAAGGUGUCCCAUAGUAUUGUUAGCCAUAUCGACGGCCUUCAAAGU----AGGCUGCUCCAA-----GCCAAACUUACAUGUGAUAACUUUACGCGCAGCUGUCAUAAAAA -------..(((((((((.....((((.(....).)))).))).)))))).((((----.((((......)-----)))..))))...(((((((.((........)).))))))).... ( -22.70) >DroYak_CAF1 90997 110 - 1 ----AUUAGGAAAAUGUCCUAUAGUAUGGUUAUCCAUAUCGACGGCCUUCAAAGUACAUAGGCU-CUCUCC-----ACCGCACUUACGUGUGAUAACUUUACGCGCAGCUGUCAUAAAAA ----..(((((.....)))))..((((((....)))))).((((((.....((((.(...((..-....))-----...).)))).(((((((.....)))))))..))))))....... ( -27.20) >consensus UAUCAAUACGAAACUGUCCUAUAGUAUUGUUACCCA__UCGAUGGCCUUCAAAGU____AGGCU_CUCUCCACCAAGCUGAAUUUACGUGUGAUAACUUUACGCGCAGCUGUCAUAAAAA ........................................((((((.....((((.....(((.............)))..)))).(((((((.....)))))))..))))))....... (-16.66 = -16.10 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:53 2006