Locus 6125

Sequence ID 2L_DroMel_CAF1
Location 17,123,947 – 17,124,059
Length 112
Max. P 0.994815
window9775

overview

Window 5

Location 17,123,947 – 17,124,059
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.98
Mean single sequence MFE -25.04
Consensus MFE -22.23
Energy contribution -21.99
Covariance contribution -0.24
Combinations/Pair 1.17
Mean z-score -2.04
Structure conservation index 0.89
SVM decision value 2.51
SVM RNA-class probability 0.994815
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17123947 112 + 22407834
ACUGCUGCUAUGGCUGAAAAUAGCACGCUUUACACCGUAAUUAAAUCAAUCAUACGACCUGUUGGUAAAGAGGCCAAGACAGAAACAGAAGUGAAAGGAGCAGCCGAAAAAA--------
.(.((((((...((((....)))).((((((....((((.............))))..((((((((......))))..)))).....)))))).....)))))).)......-------- ( -26.32)
>DroSec_CAF1 87718 120 + 1
ACUGCUGCUAUGGCUGAAAAUAGCACGCUUCACACCGUAAUUAAAUCAAUCAUACGACCUGUUGGUAAAGAGGCCAAGACAGAAACAGAAGUGAAAGGAGCAGCCAAAAAAAAAAAAACG
...((((((...((((....)))).((((((....((((.............))))..((((((((......))))..)))).....)))))).....))))))................ ( -28.42)
>DroSim_CAF1 103806 113 + 1
ACUGCUGCUAUGGCUGAAAAUAGCACGCUUUACACCGUAAUUAAAUCAAUCAUACGACCUGUUGGUAAAGAGGCCAAGACAGAAACAGAAGUGAAAGGAGCAGCCAAAAAAA-------G
...((((((...((((....)))).((((((....((((.............))))..((((((((......))))..)))).....)))))).....))))))........-------. ( -25.92)
>DroEre_CAF1 89901 110 + 1
AAUGCUGCAAUGGCUGAAAAUAACGCGCCUUACACCGUAAUUAAAUCAAUCAUACGACCUGUUGGCAAAGAGGCCCAGACAGAAACAGAAGUGAAAGGAGCAGCCAAAAA----------
...(((((....((..........)).((((.(((((((.............))))..((((((((......)))..)))))........))).)))).)))))......---------- ( -25.62)
>DroYak_CAF1 90257 110 + 1
AAUGCUACAUUGGCUGAAAAUAACACGCUUUACACCGUAAUUAAAUCAAUCAUACGACCUGUUGGUAAAGAGGCCAAGACAGAAACAGAAGCGAAAGGAGCAACCAAAAA----------
.........((((.((.........((((((....((((.............))))..((((((((......))))..)))).....)))))).......)).))))...---------- ( -18.91)
>consensus
ACUGCUGCUAUGGCUGAAAAUAGCACGCUUUACACCGUAAUUAAAUCAAUCAUACGACCUGUUGGUAAAGAGGCCAAGACAGAAACAGAAGUGAAAGGAGCAGCCAAAAAAA________
..........((((((.........((((((....((((.............))))..((((((((......)))..))))).....)))))).......)))))).............. (-22.23 = -21.99 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:52 2006