Locus 6120

Sequence ID 2L_DroMel_CAF1
Location 17,120,779 – 17,120,899
Length 120
Max. P 0.587099
window9757

overview

Window 7

Location 17,120,779 – 17,120,899
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.00
Mean single sequence MFE -31.20
Consensus MFE -20.12
Energy contribution -21.16
Covariance contribution 1.04
Combinations/Pair 1.20
Mean z-score -1.93
Structure conservation index 0.64
SVM decision value 0.11
SVM RNA-class probability 0.587099
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17120779 120 + 22407834
AUUAAAGAUUCGCUACUGAUCUCUAGACUGUGUGUUUUUUGGUCUAAAUUUUCGGUGUACUCAUCCUCCACUUGGAGAUCCGCGAAAGAGUCCGGUUCUUUCUGAUCUCUGUCAUUCUUG
....(((((((((((((((....(((((((.........))))))).....))))))........((((....))))....)))))((((..(((......)))..)))).....)))). ( -30.30)
>DroSec_CAF1 84635 120 + 1
AUUACAGAUUCGCUACUGAUCUCUAGACUGUGGGUUUUUUGGUCUAGAAAUUCGAUGUACUCAUCUUCCACUUGGAGAUCUGCGAAUGAGUCCGAUUCUUUCUGAUCUCUGUCACUCUUG
...((((((((((....(((((((((...((((((((((......))))))..((((....))))..))))))))))))).)))))...(((.((.....)).))).)))))........ ( -31.30)
>DroSim_CAF1 100699 120 + 1
CUUACAGAUUCGCUACUGAUCUCUAGACUGUGGGUUUUUUGGUCUAGAAAUUCGGUGUACUCAUCUUCCACUUGAAGAUCCGCGAAUGAGUCCGAUUCUUUCCGAUCUCUGUCACUCUUG
...((((((((((((((((..(((((((((.........)))))))))...)))))).....((((((.....))))))..)))))...(((.((.....)).))).)))))........ ( -31.10)
>DroEre_CAF1 86709 117 + 1
GAUACAGAUUCGCUACUGAUCUCUAUGCUGUGUGUUUUGUGGUCAAGAUUUUCGGUGGACUC---AUCCACUUGGAGAUCCACGAAUGAGUCCGAUUCUCUGUGAUCUUCUUCUUUCUUG
((...((((.(((....((((.....((((...((((((....))))))...))))((((((---((.(...(((....))).).))))))))))))....)))))))...))....... ( -30.40)
>DroYak_CAF1 86434 120 + 1
AUUACAGAUUCGCUACCGAUUUCUAGACUAUGUGUUUUCUGGUCUAGAUUUUCGGUGUACUCAGUAUCCACUUGGAGAUCCGCAAAUGAGUCCGAUUCUCGCUGAUCUUUUUUUUUCUGG
....((((...((.(((((..(((((((((.(......))))))))))...)))))))..(((((.(((....)))...........(((.......))))))))..........)))). ( -32.90)
>consensus
AUUACAGAUUCGCUACUGAUCUCUAGACUGUGUGUUUUUUGGUCUAGAUUUUCGGUGUACUCAUCAUCCACUUGGAGAUCCGCGAAUGAGUCCGAUUCUUUCUGAUCUCUGUCAUUCUUG
.......((((((((((((..(((((((((.........)))))))))...))))))........((((....))))....))))))(((..((........))..)))........... (-20.12 = -21.16 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:33 2006