Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,821,126 – 1,821,237 |
Length | 111 |
Max. P | 0.506125 |
Location | 1,821,126 – 1,821,237 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 71.38 |
Mean single sequence MFE | -25.75 |
Consensus MFE | -11.62 |
Energy contribution | -13.25 |
Covariance contribution | 1.62 |
Combinations/Pair | 1.12 |
Mean z-score | -1.96 |
Structure conservation index | 0.45 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506125 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1821126 111 + 22407834 GCAGCUGAAGGGUAACGGUGGGCUGUGGGUGGGAUGUUCGCUAAGCUUCUAAAUGCUUAAGUCUUUA-AUUCUAGGAGUAGCA-ACUAAUAUUCUUAGUAAAGAAUAAGCAAU ((((((.(..(....)..).)))))).(((((.....)))))...........((((((..((((((-...(((((((((...-.....))))))))))))))).)))))).. ( -30.10) >DroSec_CAF1 41140 90 + 1 GCAGCUGAAG---------------------GGAUGCUCGCCAAGCUUCUAAAAGUUAAUAUCUUUA-AUUCUAGGAGUAGCA-ACUAAUAUUCUUAGUAAAGAGUAAGCAAU ((((((....---------------------(((.(((.....))).)))...))))....((((((-...(((((((((...-.....)))))))))))))))....))... ( -21.50) >DroSim_CAF1 18831 90 + 1 GCAGCUGAAG---------------------GGAUGCUCGCCAAGCUUCUAAAAGUUAAUAUCUUUA-AUUCUAGGAGUAGUA-ACUAAUAUUCCUAGUAAAGAGUAAGCAAU ((((((....---------------------(((.(((.....))).)))...))))....((((((-...(((((((((...-.....)))))))))))))))....))... ( -24.20) >DroEre_CAF1 29588 108 + 1 GCAGCUGAAAGGUAACU----GCUGUGGGCGAAUUGCCUGUCAAGCUUCUAAGAUUUG-UAUGCUUAAGCUCGAGGAACAGCAAACCAAUACUCCGAGUAAAGAGUUAGCAAU ...(((((..(((...(----(((((((((.....)))).((.((((..((((.....-....)))))))).))...)))))).)))....(((........))))))))... ( -27.20) >consensus GCAGCUGAAG_____________________GGAUGCUCGCCAAGCUUCUAAAAGUUAAUAUCUUUA_AUUCUAGGAGUAGCA_ACUAAUAUUCCUAGUAAAGAGUAAGCAAU ...(((.........................(((.(((.....))).)))...........((((((....(((((((((.........)))))))))))))))...)))... (-11.62 = -13.25 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:57 2006