Locus 6113

Sequence ID 2L_DroMel_CAF1
Location 17,111,345 – 17,111,465
Length 120
Max. P 0.535194
window9735

overview

Window 5

Location 17,111,345 – 17,111,465
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.50
Mean single sequence MFE -33.92
Consensus MFE -28.14
Energy contribution -29.22
Covariance contribution 1.08
Combinations/Pair 1.05
Mean z-score -1.46
Structure conservation index 0.83
SVM decision value 0.00
SVM RNA-class probability 0.535194
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17111345 120 - 22407834
AUUUGGGUGCAAAAUCUAUAUUCCAUGCACACGUAGCAAAUUGCAAACGGACGUAAAUACAUCAAUUGCAAUUGGGGAGCAGUCGGUAGUCCAAGUGGACCCGUACCCGGGUGACAAACA
((((((((((..........((((.(((.......)))((((((((...((.((....)).))..)))))))).))))......((..((((....))))))))))))))))........ ( -34.20)
>DroSec_CAF1 75440 120 - 1
AUUUGGGUGCAAAAUCUAUAUUCCAUGCACACGUAGCAAAUUGCAAACGGACGUAAAUACAUAAAUUGCAAUUGGGGAGCAGUCGGUGGUCCAAGUGGACCCGUACCCGGGUGACAAACA
((((((((((..........((((.(((.......)))((((((((......((....)).....)))))))).)))).......(.(((((....))))))))))))))))........ ( -33.00)
>DroSim_CAF1 89047 120 - 1
AUUUGGGUGCAAAAUCUAUAUUCCAUGCACACGUAGCAAAUUGCAAACGGACGUAAAUACAUCAAUUGCAAUUGGGGAGCAGUCGGUGGUCCAAGUGGACCCGUACCCGGGUGACAAACA
((((((((((..........((((.(((.......)))((((((((...((.((....)).))..)))))))).)))).......(.(((((....))))))))))))))))........ ( -36.20)
>DroEre_CAF1 76872 120 - 1
AUUUGGGUGCAAAAUCUAUAUUCCGUGCACACGUAGCAAAUUGCAAACGGACGUAAAUACAUCAAUUGCAAUUGGGGAGCAGUCGGUGGACCAAGUGGAGCCGCACCCGGGUGACAAACA
((((((((((..........((((.(((.......)))((((((((...((.((....)).))..)))))))).))))......(((...((....)).)))))))))))))........ ( -34.50)
>DroYak_CAF1 77332 120 - 1
GUUUGGGUGCAAAAUCUAUAUUCCGUGCACACGUAGCAAAUUGCAAACGGACGUAAAUACAUAAAUUGCAAUUGGGGAGAAGUCGGUGGACCAAGUGGACCCGUACACGGGUGACAAACA
((((((((.((....((...((((.(((.......)))((((((((......((....)).....)))))))).))))..))....)).)))......(((((....)))))..))))). ( -31.70)
>consensus
AUUUGGGUGCAAAAUCUAUAUUCCAUGCACACGUAGCAAAUUGCAAACGGACGUAAAUACAUCAAUUGCAAUUGGGGAGCAGUCGGUGGUCCAAGUGGACCCGUACCCGGGUGACAAACA
((((((((((...(((.((.((((.(((.......)))((((((((...((.((....)).))..)))))))).))))...)).)))(((((....))))).))))))))))........ (-28.14 = -29.22 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:11 2006