Locus 6111

Sequence ID 2L_DroMel_CAF1
Location 17,109,768 – 17,109,885
Length 117
Max. P 0.997524
window9732

overview

Window 2

Location 17,109,768 – 17,109,885
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.97
Mean single sequence MFE -29.02
Consensus MFE -25.22
Energy contribution -25.46
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -2.28
Structure conservation index 0.87
SVM decision value 2.88
SVM RNA-class probability 0.997524
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17109768 117 - 22407834
CCCACAGGCACAUUUUCAAAUGGCUUAAGCUGGCCAAAGCUGAUUAUUGAACAAUUUCCGUUCAGUGGUCCAUUGUACCGCCAUCACUGC--CCCCCUGGC-ACAAUAAACCGAAAACCC
............(((((..(((((...((((......))))(((((((((((.......))))))))))).........)))))...(((--(.....)))-).........)))))... ( -29.00)
>DroSec_CAF1 73844 118 - 1
CCCACAGACACAUUUUCAAAUGGCUUAAGCUGGCCAAAGCUGAUUAUUGAACAAUUUCCGUUCAGUGGUCCAUUGUACCGCCAGCACCGAC-CCCCCUGGC-ACAAUAAACCGAAAACCC
............(((((...(((((......))))).....(((((((((((.......))))))))))).(((((...(((((.......-....)))))-))))).....)))))... ( -28.70)
>DroSim_CAF1 87476 118 - 1
CCCACAGGCACAUUUUCAAAUGGCUUAAGCUGGCCAAAGCUGAUUAUUGAACAAUUUCCGUUCAGUGGUCCAUUGUACCGCCAGCACUGCC-CCCCCUGGC-ACAAUAAACCGAAAACCC
.....((((.((((....))))))))..((((((....((.(((((((((((.......)))))))))))....))...))))))..((((-......)))-)................. ( -32.40)
>DroEre_CAF1 75106 117 - 1
ACCACAGGCACAUUUUGAAAUGGCUUAAGCUGGCCAAAGCUGAUUAUUGAACAAUUUCCGUUCGGUGGUCCAUUGUACCGCCAUCACUGUCUC---CUGGCAACAACAAAACGAAAACCC
....((((.(((...(((..((((...((((......))))(((((((((((.......))))))))))).........))))))).)))..)---)))..................... ( -27.50)
>DroYak_CAF1 75552 120 - 1
ACCACAGGCACAUUUUCAAAUGGCUUAAGCUGGCCAAAGCUGAUUAUUGAACAAUUUCCGUUCAGUGGUCCAUUGUACCGCCAUCACUGUCUCCCCCUGGCAACAAUAAACCGAAAACCC
............(((((..(((((...((((......))))(((((((((((.......))))))))))).........)))))...((((.......))))..........)))))... ( -27.50)
>consensus
CCCACAGGCACAUUUUCAAAUGGCUUAAGCUGGCCAAAGCUGAUUAUUGAACAAUUUCCGUUCAGUGGUCCAUUGUACCGCCAUCACUGCC_CCCCCUGGC_ACAAUAAACCGAAAACCC
............(((((...(((((......))))).....(((((((((((.......))))))))))).(((((...((((..............)))).))))).....)))))... (-25.22 = -25.46 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:08 2006