Locus 6110

Sequence ID 2L_DroMel_CAF1
Location 17,109,410 – 17,109,528
Length 118
Max. P 0.979058
window9731

overview

Window 1

Location 17,109,410 – 17,109,528
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.77
Mean single sequence MFE -36.78
Consensus MFE -32.04
Energy contribution -32.12
Covariance contribution 0.08
Combinations/Pair 1.07
Mean z-score -1.89
Structure conservation index 0.87
SVM decision value 1.83
SVM RNA-class probability 0.979058
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17109410 118 - 22407834
ACAGUGGAGUUCGGGGGAUCUUGGGGGGCUUUCUUCUCAAUGCCCAAUUAUCAUUUUCGGGGCUGGGAACUUUUGCAGCACUUAAUAA--CCAAAGAUCUCAGACAGCACGCAAAACUUU
...(((..(((...((((((((.((((((............)))).............(((((((.((....)).)))).))).....--)).)))))))).)))..))).......... ( -32.50)
>DroSec_CAF1 73487 117 - 1
ACAGUGGAGUU-GGGGGAUCUUGGGGGGCUUUCUUCUCAAUGCCCAAUUAUCAUUUUCGGGGCUGGGAACUUUUGCAGCACUUAAUAA--CCAAAGAUACCAGACAGCACGCAAAACUUU
...(((..(((-(..(((((((.((((((............)))).............(((((((.((....)).)))).))).....--)).))))).))...)))).)))........ ( -32.10)
>DroSim_CAF1 87119 117 - 1
ACAGUGGAGUU-GGGGGAUCUUGGAGGGCUUUCUUCUCAAUGCCCAAUUAUCAUUUUCGGGGCUGGGAACUUUUGCAGCACUUAAUAA--CCAAAGAUCCCAGACAGCACGCAAAACUUU
...(((..(((-(.((((((((((.((((............)))).............(((((((.((....)).)))).))).....--)).))))))))...)))).)))........ ( -38.20)
>DroEre_CAF1 74747 119 - 1
ACAGUGGCGUU-GGGGGAUCUUUGGGGGCUUUCUUCCCAAUGUCCAAUUAUCAUUUUCGGGGCUGGGAACUUUUGCAGCACUUAAUAACACCAAAGAUCCCAGACAGCACGCAAAACUUU
...(((..(((-(.(((((((((((((((............)))).............(((((((.((....)).)))).))).......)))))))))))...)))).)))........ ( -40.40)
>DroYak_CAF1 75195 117 - 1
ACAGUGGUGUU-GGGGGAUCUUAGGGGGCUUUCUUCUCAAUGCCCAAUUAUCAUUUUCGGGGCUGGGAACUUUUGCAGCACUUAAUAA--CCAAAGAUCCCAGACAGCACGCAAAAGUUU
...(((.((((-..((((((((.((((((............)))).............(((((((.((....)).)))).))).....--)).)))))))).)))).))).......... ( -40.70)
>consensus
ACAGUGGAGUU_GGGGGAUCUUGGGGGGCUUUCUUCUCAAUGCCCAAUUAUCAUUUUCGGGGCUGGGAACUUUUGCAGCACUUAAUAA__CCAAAGAUCCCAGACAGCACGCAAAACUUU
...(((..(((...((((((((.((((((............)))).............(((((((.((....)).)))).))).......)).)))))))).)))..))).......... (-32.04 = -32.12 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:07 2006