Locus 6106

Sequence ID	2L_DroMel_CAF1
Location	17,106,621 – 17,106,781
Length	160
Max. P	0.989924

overview

Window 7

Location	17,106,621 – 17,106,741
Length	120
Sequences	5
Columns	120
Reading direction	forward
Mean pairwise identity	98.67
Mean single sequence MFE	-30.10
Consensus MFE	-29.20
Energy contribution	-29.20
Covariance contribution	-0.00
Combinations/Pair	1.00
Mean z-score	-1.84
Structure conservation index	0.97
SVM decision value	2.19
SVM RNA-class probability	0.989924
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17106621 120 + 22407834
ACAGACGAGGCUCCUGCUUCUGGCUCAGUGGGUUCCUGCUGAUGCUCGCACAAAAGCCAGCUACGAAUCGCAUGCUUUAUGCAUAAAUAAACAAAUCACUGAAAUCAAAAACAUUGGAAA
.(((..(((((....)))))....(((((((((((..((((..(((........)))))))...)))))..((((.....))))............))))))...........))).... ( -29.70)
>DroSec_CAF1 70443 120 + 1
ACAGACGAGGCUCCUGCUUCUGGCUCAGUGGGUUCCUGCUGAUGCUCGCACAAAAGCCAGCUACGAAUCGCAUGCUUUAUGCAUAAAUAAACAAAUCACUGAAAUCAAAAACAUUGGAAA
.(((..(((((....)))))....(((((((((((..((((..(((........)))))))...)))))..((((.....))))............))))))...........))).... ( -29.70)
>DroSim_CAF1 66887 120 + 1
ACAGACGAGGCUCCUGCUUCUGGCUCAGUGGGUUCCUGCUGAUGCUCGCACAAAAGCCAGCUACGAAUCGCAUGCUUUAUGCAUAAAUAAACAAAUCACUGAAAUCAAAAACAUUGGAAA
.(((..(((((....)))))....(((((((((((..((((..(((........)))))))...)))))..((((.....))))............))))))...........))).... ( -29.70)
>DroEre_CAF1 71859 119 + 1
ACAGACGAGGCUCCUGCUUCUGGCUCAGUGGGUUCCUGCUGAUGCU-ACACAAAAGCCAGCUACGAAUCGCAUGCUUUAUGCAUAAAUAAACAAAUCACUGAAAUCAAAAACAUUCGAAA
......(((((....)))))....(((((((((((..((((..(((-.......)))))))...)))))..((((.....))))............)))))).................. ( -29.20)
>DroYak_CAF1 72097 120 + 1
ACAGAAGAGGCUCCUGCUUCUGGCUCAGUGGGUUCCUGCUGAUGCUCGCACAAAAGCCAGCUACGAAUCGCAUGCUUUAUGCAUAAAUAAACAAAUCACUGAAAUCAAAAACAUUGGAAA
.((((((((....)).))))))..(((((((((((..((((..(((........)))))))...)))))..((((.....))))............)))))).................. ( -32.20)
>consensus
ACAGACGAGGCUCCUGCUUCUGGCUCAGUGGGUUCCUGCUGAUGCUCGCACAAAAGCCAGCUACGAAUCGCAUGCUUUAUGCAUAAAUAAACAAAUCACUGAAAUCAAAAACAUUGGAAA
...((.(((((....)))))....(((((((((((..((((..(((........)))))))...)))))..((((.....))))............))))))..)).............. (-29.20 = -29.20 +  -0.00)

alignment

secondary structure

dotplot

Window 8

Location	17,106,661 – 17,106,781
Length	120
Sequences	5
Columns	120
Reading direction	reverse
Mean pairwise identity	98.33
Mean single sequence MFE	-31.22
Consensus MFE	-29.18
Energy contribution	-29.30
Covariance contribution	0.12
Combinations/Pair	1.05
Mean z-score	-1.72
Structure conservation index	0.93
SVM decision value	1.62
SVM RNA-class probability	0.968098
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17106661 120 - 22407834
ACUCGUCCUUGGAUGCACAUUGAGCUGAGUUUUGAAGUCAUUUCCAAUGUUUUUGAUUUCAGUGAUUUGUUUAUUUAUGCAUAAAGCAUGCGAUUCGUAGCUGGCUUUUGUGCGAGCAUC
.((((((....)))(((((..(((((.(((((((((((((.............))))))))).((.((((......((((.....)))))))).))..))))))))).)))))))).... ( -32.02)
>DroSec_CAF1 70483 120 - 1
ACUCGUCCUUGGAUGCACAUUGAGCUGCGUUUUGAAGUCAUUUCCAAUGUUUUUGAUUUCAGUGAUUUGUUUAUUUAUGCAUAAAGCAUGCGAUUCGUAGCUGGCUUUUGUGCGAGCAUC
.((((((....)))(((((.(.((((((...(((((((((.............))))))))).((.((((......((((.....)))))))).)))))))).)....)))))))).... ( -33.12)
>DroSim_CAF1 66927 120 - 1
ACUCGUCCUUGGAUGCACAUUGAGCUGAGUUUUGAAGUCAUUUCCAAUGUUUUUGAUUUCAGUGAUUUGUUUAUUUAUGCAUAAAGCAUGCGAUUCGUAGCUGGCUUUUGUGCGAGCAUC
.((((((....)))(((((..(((((.(((((((((((((.............))))))))).((.((((......((((.....)))))))).))..))))))))).)))))))).... ( -32.02)
>DroEre_CAF1 71899 119 - 1
ACUCGUCCUUGGAUGCACAUUGAGCUGAGUUUUGAAGUCAUUUCGAAUGUUUUUGAUUUCAGUGAUUUGUUUAUUUAUGCAUAAAGCAUGCGAUUCGUAGCUGGCUUUUGUGU-AGCAUC
...........(((((((((.(((((.(((((((((((((.............))))))))).((.((((......((((.....)))))))).))..)))))))))..))))-.))))) ( -29.12)
>DroYak_CAF1 72137 120 - 1
ACUUGUCCUUGGAUGCACAUUGAGCUGAGUUUUGAAGUCAUUUCCAAUGUUUUUGAUUUCAGUGAUUUGUUUAUUUAUGCAUAAAGCAUGCGAUUCGUAGCUGGCUUUUGUGCGAGCAUC
...........(((((....(((((.((((((((((((((.............))))))))).))))))))))....((((((((((..((........))..)).)))))))).))))) ( -29.82)
>consensus
ACUCGUCCUUGGAUGCACAUUGAGCUGAGUUUUGAAGUCAUUUCCAAUGUUUUUGAUUUCAGUGAUUUGUUUAUUUAUGCAUAAAGCAUGCGAUUCGUAGCUGGCUUUUGUGCGAGCAUC
.((((((....)))(((((..(((((.(((((((((((((.............))))))))).((.((((......((((.....)))))))).))..))))))))).)))))))).... (-29.18 = -29.30 +   0.12)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:42 2006