Locus 6105

Sequence ID 2L_DroMel_CAF1
Location 17,106,396 – 17,106,507
Length 111
Max. P 0.861330
window9716

overview

Window 6

Location 17,106,396 – 17,106,507
Length 111
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 76.84
Mean single sequence MFE -24.98
Consensus MFE -14.08
Energy contribution -14.12
Covariance contribution 0.04
Combinations/Pair 1.22
Mean z-score -1.97
Structure conservation index 0.56
SVM decision value 0.83
SVM RNA-class probability 0.861330
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17106396 111 - 22407834
UGCCAUUCCACGGAAACGCAACUGGCACACCUACACCGGUGUUCAAAAAAAUAGCAACUAGUUACUUAGGGAAUACAACAAA----UUCUAAACUUGAGUUUAUGUGAUCCAC-AA
.((((.....((....))....))))(((((......))))).........((((.....)))).....(((.((((..(((----(((.......)))))).)))).)))..-.. ( -25.00)
>DroSec_CAF1 70221 108 - 1
UGCCAUUCCACGGAAACGCAACUGGCACACCUACACCGGUGGUCAAGAAAAUAGCAACAAGUUACCUAAGGCACACAA---A----UUCUAAAGUUGAGUUUAUGUUAUCCAC-UU
.(((.(((..((....))....((((.((((......)))))))).)))..((((.....)))).....)))(((.((---(----(((.......)))))).))).......-.. ( -24.10)
>DroSim_CAF1 66662 111 - 1
UGCCAUUCCACGGAAACGCAACUGGCACACCUACAUCGGUGGUCAAAAAAAUAACAACAAGUUACCUAAGGCACACAAAAAA----UCUUAAACUUGAGUUUAUGUGAUCCAC-UU
((((......((....))....((((.((((......))))))))......((((.....)))).....))))((((.(((.----((........)).))).))))......-.. ( -24.20)
>DroEre_CAF1 71634 111 - 1
UGCCAUUCCACGGAAACGCAACUGGCGCACCUACACCGGUGGUCGAAAAAAUAGCAAAGGGUUCCUUAAUCCAUGGAAAGAAACAUUUAUGAGCUCAG-----UGUAAUUCAUCAU
.((((.....((....))....)))).((((......))))...((...(((.(((..((((((..(((...(((........)))))).))))))..-----))).)))..)).. ( -24.00)
>DroYak_CAF1 71870 113 - 1
UGCCAUUCCACGGAAACGCAACUGGCACACCUACACCGGCGGUCAAAAAAAUAGCAAAAAGUUGGUUUUGGCAUUA---AAAACUUUUAUGAACUUAAGUUUAUGUAGCUGACCAA
(((((.....((....))....))))).........((((.(((((((...((((.....)))).)))))))....---........(((((((....)))))))..))))..... ( -27.60)
>consensus
UGCCAUUCCACGGAAACGCAACUGGCACACCUACACCGGUGGUCAAAAAAAUAGCAACAAGUUACUUAAGGCAUACAA_AAA____UUAUAAACUUGAGUUUAUGUAAUCCAC_AU
(((((.....((....))....)))))((((......))))(((.......((((.....)))).....)))............................................ (-14.08 = -14.12 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:40 2006