Locus 6103

Sequence ID 2L_DroMel_CAF1
Location 17,103,576 – 17,103,678
Length 102
Max. P 0.705917
window9713

overview

Window 3

Location 17,103,576 – 17,103,678
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 87.38
Mean single sequence MFE -22.19
Consensus MFE -18.18
Energy contribution -18.22
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.58
Structure conservation index 0.82
SVM decision value 0.36
SVM RNA-class probability 0.705917
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17103576 102 + 22407834
GUCAAGCAUAGUUUUUGGGGCAGAGAGAGAAAAACGCAAACUUUCUGCCAACAUUUCCUGCACAUAAAAUAAAAAAACAUAAAAUUCAGCUGUCUUGUGCUA
((((((.((((((.....(((((((((.............)))))))))..((.....))...........................)))))))))).)).. ( -19.02)
>DroSec_CAF1 67533 87 + 1
GUCAAGCAUAGUUUUUGGGGCAGAGAGAGAAAAACGCAAACUUUCUGCCAACAUUUCCUGCACACA---------------AAAUUCAGCUGUCUUGUGCUA
((((((.((((((((((.(((((((((.............)))))))))..((.....))....))---------------)))....))))))))).)).. ( -20.52)
>DroSim_CAF1 63817 85 + 1
GUCAAGCAUAGUUUGUGGGGCAGAGAGAGAA-AACGCAAACUUUCUGCCAACAUUUCCUGCACACA---------------AAAUUCAGCUGUC-UGUGCUA
....(((((((((((((..((((.((((...-...(((.......))).....)))))))).))))---------------))..........)-)))))). ( -23.80)
>DroEre_CAF1 68654 86 + 1
GUCAAGCAUAGUUUUUGGGGCAGGGAGAGAA-AGCGCAAACUUUCUGCCAACAUUUCCUGCACACA---------------GAAUUCAGCUGUCUUGGGCUA
.(((((.((((((((((..((((((((((((-((......)))))).......))))))))...))---------------)))....)))))))))).... ( -25.71)
>DroYak_CAF1 68447 80 + 1
GUCAAGCAUAGUUUUUGGGGCAGAGAGAGAA-------AACUUUCUGCCAACAUUUCCUGCACACA---------------AAAUUCAGCUGUCUUGUGCUA
((((((.((((((((((.(((((((((....-------..)))))))))..((.....))....))---------------)))....))))))))).)).. ( -21.90)
>consensus
GUCAAGCAUAGUUUUUGGGGCAGAGAGAGAA_AACGCAAACUUUCUGCCAACAUUUCCUGCACACA_______________AAAUUCAGCUGUCUUGUGCUA
((((((.((((((.....(((((((((.............)))))))))..((.....))...........................)))))))))).)).. (-18.18 = -18.22 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:36 2006