| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,820,533 – 1,820,653 |
| Length | 120 |
| Max. P | 0.810080 |
| Location | 1,820,533 – 1,820,653 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.11 |
| Mean single sequence MFE | -30.61 |
| Consensus MFE | -26.59 |
| Energy contribution | -27.29 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.810080 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1820533 120 + 22407834 CUCCGCUUAAAGUUUUGGCCAAAUGUUUGCCAGUCCAUUUAUAAAUCCGUGCAGCUCUUGCUGCCCUAUGUGCCCAGGGGAUUUUUCCCGAACAGGACAAAGCAAAUAUUGAAACUAUAA ..........((((((.....(((((((((..((((............(.(((((....))))).)...........((((....)))).....))))...))))))))))))))).... ( -32.10) >DroSec_CAF1 40547 120 + 1 CUCCGCUUAAAGUUUUGGCCAAAUGUUUGCCAGUCCAUUUAUAAAUCCGUGCAGCUCUUGCUGCCCUAUGUGCCCAGGGGAUUUUUCCCGAACAGGACAAAGCAAAUAUUGAAACUAUAA ..........((((((.....(((((((((..((((............(.(((((....))))).)...........((((....)))).....))))...))))))))))))))).... ( -32.10) >DroSim_CAF1 18238 120 + 1 CUCCGCUUAAAGUUUUGGCCAAAUGUUUGCCAGUCCAUUUAUAAAUCCGUGCAGCUCUUGCUGCCCUAUGUGCCCAGGGGAUUUUUCCCGAACAGGACAAAGCAAAUAUUGAAACUAUAA ..........((((((.....(((((((((..((((............(.(((((....))))).)...........((((....)))).....))))...))))))))))))))).... ( -32.10) >DroPer_CAF1 32447 116 + 1 UCGCUCUUAAAGU-UUGGCUAAAUGUUUGCGAGUCCAUUUAUAAAUCCGUGCAACGUUUG---CUCUAUGUGCCCAAGGGAUUUCCCCCGAACAGGACAGGGCAAAUAUUGAAACUAUAA ..........(((-(((((.(((((((((((................)))).))))))))---)).(((.(((((..(((....)))((.....))...))))).)))...))))).... ( -26.19) >DroEre_CAF1 28987 120 + 1 CUUCUCUUAAAGUUUUGGCCAAAUGUUUGCCAGUCCAUUUAUAAAUCCGUGCAGCUCUGGCUGCCCUAUGUGCCCAGGGGAUUUUUACCGAACAGGACAAAGCAAAUAUUGAAACUAUAA ..........((((((.....(((((((((..((((......((((((..(((((....)))))(((........)))))))))..........))))...))))))))))))))).... ( -30.59) >DroYak_CAF1 5320 120 + 1 CUCCUCUUAAAGUUUUGGCCAAAUGUUUGCCAGUCCAUUUAUAAAUCCGUGCAGCUCCGGCUGCCCUAUGUGCCCAGGGGAUUUUUACCGAACAGGACAAAGCAAAUAUUGAAACUAUAA ..........((((((.....(((((((((..((((......((((((..(((((....)))))(((........)))))))))..........))))...))))))))))))))).... ( -30.59) >consensus CUCCGCUUAAAGUUUUGGCCAAAUGUUUGCCAGUCCAUUUAUAAAUCCGUGCAGCUCUUGCUGCCCUAUGUGCCCAGGGGAUUUUUCCCGAACAGGACAAAGCAAAUAUUGAAACUAUAA ..........((((((.....(((((((((..((((......((((((..(((((....)))))(((........)))))))))..........))))...))))))))))))))).... (-26.59 = -27.29 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:53 2006