Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 230,905 – 231,007 |
Length | 102 |
Max. P | 0.840632 |
Location | 230,905 – 231,007 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 81.44 |
Mean single sequence MFE | -39.12 |
Consensus MFE | -27.61 |
Energy contribution | -26.25 |
Covariance contribution | -1.36 |
Combinations/Pair | 1.30 |
Mean z-score | -2.12 |
Structure conservation index | 0.71 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.840632 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 230905 102 - 22407834 AAUCCACAGGAGUGUCUACUCCUGCUCCGGGCUCUGCAUCCGGAAGCAAUAGUGGAAACACGACUCCGGCUCACAAAUCUAGUGCGCUGGAUGGGU---CCGAUA ......(((((((....)))))))...((((((((((........)))...(((....)))...((((((.(((.......))).)))))).))))---)))... ( -41.10) >DroPse_CAF1 28778 105 - 1 AGUCGACUGGCAGUUCAACCCCGGCACCGGGCACUGCCUCGGGGAGCAACAGUGGCAACACGACCCCCGCCCACAAGUCGAGUGCUCUGGAUGGAAGUGGAGACA .(((....((((((.....((((....)))).)))))).(((((.(.....(((....)))..)))))).((((..(((.((....)).)))....)))).))). ( -41.80) >DroSim_CAF1 23129 102 - 1 AAUCCACAGGAGUGUCUACUCCUGCUCCGGGCUCUGCAUCCGGAAGCAAUAGUGGAAACACAACUCCGGCUCACAAAUCUAGUGCGCUGGAUGGGU---CAGAUA .(((((.((((((....))))))((((((((.......))))).)))....(((....)))...((((((.(((.......))).)))))))))))---...... ( -39.50) >DroEre_CAF1 24093 102 - 1 AAUCCACGGGAAUGUCUACUCCAGCUCCGGGCUCCGCAUCCGGAAGCAAUAGUGGAAACACCACUCCGGCCCACAAACCUAGUGCUCUGGAUGGGU---CCGAUA ......((((....((((((...((((((((.......))))).)))...))))))....(((.(((((..(((.......)))..)))))))).)---)))... ( -33.70) >DroYak_CAF1 25818 102 - 1 AAUCCACGGGAAUGUCUACUCCCGCUCCGGGCUCCGCAUCCGGAAGCAAUAGUGGAAACACGACUCCGGCUCACAAGUCCAGUGCACUGGAUGGGU---CCGAUA ..(((((((((........))))((((((((.......))))).)))....)))))..........(((((((....(((((....))))))))).---)))... ( -38.60) >DroPer_CAF1 29066 105 - 1 AGUCGACUGGCAGCUCAACCCCGGCACCGGGCACUGCCUCGGGGAGCAACAGUGGCAACACGACCCCCGCCCACAAGUCGAGUGCUCUGGAUGGAAGUGGAGACA .(((....(((((......((((....))))..))))).(((((.(.....(((....)))..)))))).((((..(((.((....)).)))....)))).))). ( -40.00) >consensus AAUCCACAGGAAUGUCUACUCCGGCUCCGGGCUCUGCAUCCGGAAGCAAUAGUGGAAACACGACUCCGGCCCACAAAUCUAGUGCUCUGGAUGGGU___CAGAUA .(((..(((((........)))))..((((((........((((.......(((....)))...))))))))....((((((....)))))))).......))). (-27.61 = -26.25 + -1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:41 2006