Locus 6099

Sequence ID 2L_DroMel_CAF1
Location 17,100,241 – 17,100,340
Length 99
Max. P 0.958339
window9701

overview

Window 1

Location 17,100,241 – 17,100,340
Length 99
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 94.36
Mean single sequence MFE -16.48
Consensus MFE -14.74
Energy contribution -15.58
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -1.59
Structure conservation index 0.89
SVM decision value 1.49
SVM RNA-class probability 0.958339
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17100241 99 + 22407834
UCUCA-GCCCUUGUAUUUUUCCUUAAGCAGUUCUGCUCUAUAUUUCAUAAUUUUCCCCAGCCCAUGGCUCAUGUCUUUUUUGGGCUAAUGAAAAAUUCGC
.....-......(.(((((((....((((....)))).....................((((((.(((....))).....))))))...))))))).).. ( -18.80)
>DroSec_CAF1 64075 100 + 1
UCUCAAACCCUCGUAUUUUUCCUUAAGCAGUUCUGCUCUAUAUUUCAUAAUUUUCCCCAGCCCAUGGCUCAUGUCUCUUUUGGGCUAAUAAAAAAUUCGC
...........((.((((((.....((((....)))).....................((((((.(((....))).....))))))....)))))).)). ( -16.70)
>DroSim_CAF1 60572 99 + 1
UCUCA-GCCCUCGUAUUUUUCCUUAAGCAGUUCUGCUCUAUAUUUCAUAAUUUUCCCCAGCCCAUGGCUCAUGUCUUUUUUGGGCUAAUGAAAAAUUCGC
.....-.....((.(((((((....((((....)))).....................((((((.(((....))).....))))))...))))))).)). ( -20.00)
>DroEre_CAF1 65240 98 + 1
UCUCA-GCCCUCGUAUUUUUGCUUAAGCAGUUCUGCUCUAUAUUUCAUAAUUUUCCCCAGCCCAUGGCUCAUGUCCUUU-UCGGCUAAUGAAAAAUUCGC
....(-(((...(((...((((....))))...)))......................((((...))))..........-..)))).............. ( -13.30)
>DroYak_CAF1 64412 98 + 1
UCUCG-GCCCUCGUAUUUUUCCCUAAGCAGUUCUGCUCUAUAUUUCAUAAUUCUCCCCCGCCCAUGGCUCAUGUCUUUU-UCGGCUAAUGAAAAAUUCGC
.....-.....((.(((((((....((((....))))......................(((...(((....)))....-..)))....))))))).)). ( -13.60)
>consensus
UCUCA_GCCCUCGUAUUUUUCCUUAAGCAGUUCUGCUCUAUAUUUCAUAAUUUUCCCCAGCCCAUGGCUCAUGUCUUUUUUGGGCUAAUGAAAAAUUCGC
...........((.(((((((.(((((((....))))......................(((((.(((....))).....)))))))).))))))).)). (-14.74 = -15.58 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:21 2006