Locus 6098

Sequence ID 2L_DroMel_CAF1
Location 17,099,676 – 17,099,777
Length 101
Max. P 0.599800
window9700

overview

Window 0

Location 17,099,676 – 17,099,777
Length 101
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 85.97
Mean single sequence MFE -23.92
Consensus MFE -18.45
Energy contribution -18.08
Covariance contribution -0.38
Combinations/Pair 1.20
Mean z-score -1.51
Structure conservation index 0.77
SVM decision value 0.13
SVM RNA-class probability 0.599800
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17099676 101 + 22407834
GCUGACAUAAAUAAUGUCGGGUAGGCCCAGAAUGGGCUCUGUUUCUUGAUAGUGCUCAGAAAAAAAUUGUAAACAAUUUUAUACAAAACAAAAGAAUAUUU
...(((((.....)))))(((....)))....(((((.(((((....))))).)))))....(((((((....)))))))..................... ( -24.20)
>DroSec_CAF1 63497 101 + 1
GCUGACAUAAAUAAUGUUGGGUAGGCCCAGAAUGGGCUCUGUUUCUUGAUAGCGCUUAGCAAAACAGUCUGAAGAAUUUUAUACAAAACUAAAGAAUAAUU
.(..((((.....))))..).(((((((.....)))).))).(((((....((.....))......((.((((....)))).)).......)))))..... ( -18.60)
>DroEre_CAF1 64730 100 + 1
GCUGACAUAAAUAAUGUUGGGUAGGCCCAGAAUGGGCUCUGGUUCUUGAUAGCGCUUAGCAAAACAGUCUACAGAGUUUUGUGCAAAACUAAAGAAAA-GU
.(..((((.....))))..)(((((((((((......))))).........((.....))......))))))..((((((....))))))........-.. ( -24.00)
>DroYak_CAF1 63910 101 + 1
CCUGACAUAAAUAAUGUCGGGUAGGCCCGGAAUGGGCCCUGGUUCUUGAUAGCGCUUAGCAAAACAGUCUUCAGACUUUUACCCAAAACUUGAGAAAAUGU
((((((((.....))))))))..(((((.....)))))....((((..(..((.....)).....((((....))))............)..))))..... ( -28.90)
>consensus
GCUGACAUAAAUAAUGUCGGGUAGGCCCAGAAUGGGCUCUGGUUCUUGAUAGCGCUUAGCAAAACAGUCUAAAGAAUUUUAUACAAAACUAAAGAAAAUGU
.(((((((.....))))))).(((((((.....)))).))).(((((....((.....)).....((((....))))..............)))))..... (-18.45 = -18.08 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:20 2006