Locus 6097

Sequence ID 2L_DroMel_CAF1
Location 17,099,494 – 17,099,606
Length 112
Max. P 0.786926
window9699

overview

Window 9

Location 17,099,494 – 17,099,606
Length 112
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 93.96
Mean single sequence MFE -28.45
Consensus MFE -25.07
Energy contribution -25.07
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.50
Structure conservation index 0.88
SVM decision value 0.57
SVM RNA-class probability 0.786926
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17099494 112 + 22407834
GCCGCUUCACUUAACGAGCAAGUUGAUUUUAAAUUGUUUUUGCAAUUGGAGCAUGCGAUUAAAUAUAAAUAGUGGCAGUCCAGUCC-------GGACCAACUUUAAAGGCC-CCUUUUGC
((((((((..(((((......))))).....((((((....))))))))))).(((.((((........)))).)))((((.....-------))))..........))).-........ ( -27.30)
>DroPse_CAF1 56230 111 + 1
GCCGCUUCACUUAACGAGCAAGUUGAUUUUAAAUUGUUUUUGCAAUUGGAGCAUGCGAUUAAAUAUAAAUAGUUGCAGUCCGUU---------GGACCAACUUUAAAGGCUCCCAUUUAC
((((((((..(((((......))))).....((((((....))))))))))).((((((((........))))))))((((...---------))))..........))).......... ( -27.80)
>DroSim_CAF1 59518 112 + 1
GCCGCUUCACUUAACGAGCAAGUUGAUUUUAAAUUGUUUUUGCAAUUGGAGCAUGCGAUUAAAUAUAAAUAGUGGCAGUCCAGUCC-------GGACCAACUUUAAAGGCC-CCUUUUGC
((((((((..(((((......))))).....((((((....))))))))))).(((.((((........)))).)))((((.....-------))))..........))).-........ ( -27.30)
>DroEre_CAF1 64540 112 + 1
GCCGCUUCACUUAACGAGCAAGUUGAUUUUAAAUUGUUUUUGCAAUUGGAGCAUGCGAUUAAAUAUAAAUAGUGGCAGUCCAGUCC-------GGACCAACUUUAAAGGCC-CCUUUUGC
((((((((..(((((......))))).....((((((....))))))))))).(((.((((........)))).)))((((.....-------))))..........))).-........ ( -27.30)
>DroYak_CAF1 63720 119 + 1
GCCGCUUCACUUAACGAGCAAGUUGAUUUUAAAUUGUUUUUGCAAUUGGAGCAUGCGAUUAAAUAUAAAUAGUGGCAGUCCAGUCCGGACUCCGGACCAACUUUAAAGGCC-CCUUUUGC
(((((((........))))((((((......((((((....))))))(((...(((.((((........)))).))).))).((((((...))))))))))))....))).-........ ( -33.60)
>DroPer_CAF1 54561 111 + 1
GCCGCUUCACUUAACGAGCAAGUUGAUUUUAAAUUGUUUUUGCAAUUGGAGCAUGCGAUUAAAUAUAAAUAGUUGCAGUCCGUU---------GGACCAACUUUAAAGGCCCCCAUUUAC
((((((((..(((((......))))).....((((((....))))))))))).((((((((........))))))))((((...---------))))..........))).......... ( -27.40)
>consensus
GCCGCUUCACUUAACGAGCAAGUUGAUUUUAAAUUGUUUUUGCAAUUGGAGCAUGCGAUUAAAUAUAAAUAGUGGCAGUCCAGUCC_______GGACCAACUUUAAAGGCC_CCUUUUGC
((((((((..(((((......))))).....((((((....))))))))))).(((.((((........)))).)))((((............))))..........))).......... (-25.07 = -25.07 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:19 2006