Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,099,246 – 17,099,351 |
Length | 105 |
Max. P | 0.687683 |
Location | 17,099,246 – 17,099,351 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.24 |
Mean single sequence MFE | -28.05 |
Consensus MFE | -23.64 |
Energy contribution | -23.50 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.03 |
Mean z-score | -1.79 |
Structure conservation index | 0.84 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687683 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17099246 105 - 22407834 UACUACUGCUGGC--------------AUCGUUACUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGUACCG- ..........((.--------------(((((((.(((((...((((((...((((((((((...(((((....))))).....)))))))))))))))).)).))).))))))).)).- ( -27.60) >DroSec_CAF1 63068 105 - 1 UACUACUGCUGGC--------------AUCGUUACUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGUACCG- ..........((.--------------(((((((.(((((...((((((...((((((((((...(((((....))))).....)))))))))))))))).)).))).))))))).)).- ( -27.60) >DroSim_CAF1 59270 105 - 1 UACUACUGCUGGC--------------AUCGUUACUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGUACCG- ..........((.--------------(((((((.(((((...((((((...((((((((((...(((((....))))).....)))))))))))))))).)).))).))))))).)).- ( -27.60) >DroEre_CAF1 64332 105 - 1 UACUACUGCUGGC--------------AUCGUUACUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGUACCG- ..........((.--------------(((((((.(((((...((((((...((((((((((...(((((....))))).....)))))))))))))))).)).))).))))))).)).- ( -27.60) >DroYak_CAF1 63470 105 - 1 UACUACUGCUGGC--------------AUCGUUACUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGUACCG- ..........((.--------------(((((((.(((((...((((((...((((((((((...(((((....))))).....)))))))))))))))).)).))).))))))).)).- ( -27.60) >DroPer_CAF1 54262 120 - 1 UGCUGCUGCUGGCUCUGCCACCGCGCCGUCGUUACUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGUACAGG ..(((.(((.(((.(.......).)))..(((((.(((((...((((((...((((((((((...(((((....))))).....)))))))))))))))).)).))).))))))))))). ( -30.30) >consensus UACUACUGCUGGC______________AUCGUUACUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGUACCG_ ...........................(((((((.(((((...((((((...((((((((((...(((((....))))).....)))))))))))))))).)).))).)))))))..... (-23.64 = -23.50 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:18 2006