Locus 6095

Sequence ID 2L_DroMel_CAF1
Location 17,097,290 – 17,097,391
Length 101
Max. P 0.838823
window9697

overview

Window 7

Location 17,097,290 – 17,097,391
Length 101
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 81.13
Mean single sequence MFE -26.82
Consensus MFE -20.01
Energy contribution -19.98
Covariance contribution -0.03
Combinations/Pair 1.11
Mean z-score -1.90
Structure conservation index 0.75
SVM decision value 0.74
SVM RNA-class probability 0.838823
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17097290 101 - 22407834
CGCAUGCCACAUGGUGCCAAACAUUGGCAUAGACAACAAG--------ACACACUGACUUC------AC-GGCUCAAGGAGGGCGCGCUUUUAUGCCAAACACAUUGGCAAACAUA
.((.((((.....((((((.....))))))..........--------.........((((------..-.......)))))))).)).....((((((.....))))))...... ( -25.50)
>DroPse_CAF1 53705 107 - 1
CGCAUGCCACAUGGCGCCAAACAUUUGCCCAGACAACAGU--------ACGGACGGAACACAGCCAAAA-GGCCAGAGAGAGGCGCGCAUUUAUGCCAAACACAUUGGCAAACAUA
....(((((.((((((((.....((((.((..((....))--------..)).)))).....(((....-)))........)))))(((....)))......))))))))...... ( -28.90)
>DroSec_CAF1 60995 101 - 1
CGCAUGCCACAUGGUGCCAAACAUUGGCACAGACAACAAG--------ACACACAGACUUC------AC-GGCUCAAGGAGGGCGCGCAUUUAUGCCAAACACAUUGGCAAACAUA
.((.((((.....((((((.....))))))..........--------.........((((------..-.......)))))))).)).....((((((.....))))))...... ( -27.90)
>DroSim_CAF1 57285 101 - 1
CGCAUGCCACAUGGUGCCAAACAUUGGCACAGACAACAAG--------ACACACAGACUUC------AC-GGCUCAAGGAGGGCGCGCUUUUAUGCCAAACACAUUGGCAAACAUA
.((.((((.....((((((.....))))))..........--------.........((((------..-.......)))))))).)).....((((((.....))))))...... ( -27.40)
>DroEre_CAF1 62384 87 - 1
CGCAUGCCACAUGGUGCCAACCAGCGGCAUAGACAACAAG--------ACACACCAAC---------------------AGGGCGCGCUUUUAUGCCGAACACAUUGGCAAACAUA
....(((((..((((....)))).(((((((((.....((--------.(.(.((...---------------------..)).).)))))))))))).......)))))...... ( -24.50)
>DroYak_CAF1 61455 110 - 1
CGCAUGCCACAUGGUGCCAGCCAUCGGCACAGACAACAAGACAACAAGACACACAGACCUC------ACAGGCUCAGCGAAGGCGCGCUUUUAUGCCAAACACAUUGGCAAACAUA
.((.((((.....(((((.......))))).........................((((..------...)).))......)))).)).....((((((.....))))))...... ( -26.70)
>consensus
CGCAUGCCACAUGGUGCCAAACAUUGGCACAGACAACAAG________ACACACAGACUUC______AC_GGCUCAAGGAGGGCGCGCUUUUAUGCCAAACACAUUGGCAAACAUA
.((.((((.....(((((.......))))).(....)............................................)))).)).....((((((.....))))))...... (-20.01 = -19.98 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:16 2006