Locus 6093

Sequence ID 2L_DroMel_CAF1
Location 17,094,349 – 17,094,443
Length 94
Max. P 0.832509
window9693

overview

Window 3

Location 17,094,349 – 17,094,443
Length 94
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.92
Mean single sequence MFE -24.20
Consensus MFE -16.28
Energy contribution -17.00
Covariance contribution 0.72
Combinations/Pair 1.09
Mean z-score -2.40
Structure conservation index 0.67
SVM decision value 0.72
SVM RNA-class probability 0.832509
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17094349 94 + 22407834
AAUUAAAAAUACAAAAGCAUAAAGAGAG--------------GC------------CAGGAAGCGGCCUGCUAAUGGCUGUCGAUGGCGAUUAAUUUAUUGUUAUUGCUUAGGUAAACAA
.........(((..((((.....((..(--------------((------------((...(((.....)))..))))).))(((((((((......)))))))))))))..)))..... ( -24.00)
>DroPse_CAF1 50149 119 + 1
AAUUAAAAAUACAAAAGCAUAAAGAGAGCGAGAGAGAGAGAGGACCGGAGGAGUGGGAGGAGG-GCGCCACUAAUGGCUGUCGAUGGCGAUUAAUUUAUUGUUAUUGCUUAGGUAAACAA
.........(((..((((.....((.(((...............((...))(((((..(....-.).)))))....))).))(((((((((......)))))))))))))..)))..... ( -24.50)
>DroSim_CAF1 54328 94 + 1
AAUUAAAAAUACAAAAGCAUAAAGAGAG--------------GA------------CAGGAAGCGGCCUGCUAAUGGCUGUCGAUGACGAUUAAUUUAUUGUUAUUGCUUACGUAAACAA
.........(((..((((..........--------------..------------......((((((.......)))))).(((((((((......)))))))))))))..)))..... ( -20.50)
>DroEre_CAF1 59413 94 + 1
AAUUAAAAAUACAAAAGCAUAAAGAGAG--------------GC------------CAGGAAGCGGCCUGCUAAUGGCUGUCGAUGGCGAUUAAUUUAUUGUUAUUGCUUAGGUAAACAA
.........(((..((((.....((..(--------------((------------((...(((.....)))..))))).))(((((((((......)))))))))))))..)))..... ( -24.00)
>DroYak_CAF1 58489 94 + 1
AAUUAAAAAUACAAAAGCAUAAAGAGAG--------------GC------------CAGGAAGCGGCCUGCUAAUGGCCGUCGAUGGCGAUUAAUUUAUUGUUAUUGCUUAGGUAAACAA
.........(((..((((.....((..(--------------((------------((...(((.....)))..))))).))(((((((((......)))))))))))))..)))..... ( -25.90)
>DroPer_CAF1 48577 119 + 1
AAUUAAAAGUACAAAAGCAUAAAGAGAGCGAGAGAGAGAGAGGGCGGAAGGAGUGGGAGGAGG-GCGCCACUAAUGGCUGUCGAUGGCGAUUAAUUUAUUGUUAUUGCUUAGGUAAACAA
.........(((..((((.....((.(((...............(....).(((((..(....-.).)))))....))).))(((((((((......)))))))))))))..)))..... ( -26.30)
>consensus
AAUUAAAAAUACAAAAGCAUAAAGAGAG______________GC____________CAGGAAGCGGCCUGCUAAUGGCUGUCGAUGGCGAUUAAUUUAUUGUUAUUGCUUAGGUAAACAA
.........(((..((((............................................((((((.......)))))).(((((((((......)))))))))))))..)))..... (-16.28 = -17.00 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:12 2006