Locus 6092

Sequence ID 2L_DroMel_CAF1
Location 17,090,183 – 17,090,273
Length 90
Max. P 0.595629
window9692

overview

Window 2

Location 17,090,183 – 17,090,273
Length 90
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 87.00
Mean single sequence MFE -31.98
Consensus MFE -23.95
Energy contribution -24.32
Covariance contribution 0.37
Combinations/Pair 1.07
Mean z-score -1.51
Structure conservation index 0.75
SVM decision value 0.12
SVM RNA-class probability 0.595629
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17090183 90 + 22407834
AGCGUCUGGUGUUGAUUGCCACAAUGGGUAUUCUGCAGCCUAGGACUCAG------------ACUCGGAUUCACAUUCGGAUCCACACCCACCACAUGCCCA
.((((.((((((((.......))))((((..((((.(((....).)))))------------)...((((((......))))))..)))))))).))))... ( -27.50)
>DroSim_CAF1 49719 90 + 1
AGCGUCUGGUGUUGAUUGCCACAAUGGGUAUUCUGCAGCCUAGGACUCGG------------ACUCGGAUUCGCAUUCGGAUCCACACCCACCACAUGCCCA
.((((.((((((((.......))))((((..((((.(((....).)))))------------)...(((((((....)))))))..)))))))).))))... ( -28.00)
>DroEre_CAF1 55319 102 + 1
GGCGUCUGGUGUUGAUUGCCACAAUGGGUAUUCCGCAGCCUAGGAGUCGGACUCGGACUCGGACUCGGAUUCGCAUUCGGAUCCACACCCACCACAUGCCCA
(((((.(((((..((...((....(((((........))))).(((((.......)))))))..))(((((((....))))))).....))))).))))).. ( -37.30)
>DroYak_CAF1 54350 102 + 1
GGCGUCUGGUGUUGAUUGCCACAAUGGGUAUUCUGCAGCCUAGGACUCGGACUCGAACUCGGAUUGGCAUUCACAUUCGGGUCCACACCCACCACAUGCCCA
(((((.((((..(((.(((((...(((((..((((.(((....).)))))).....)))))...))))).))).....((((....)))))))).))))).. ( -35.10)
>consensus
AGCGUCUGGUGUUGAUUGCCACAAUGGGUAUUCUGCAGCCUAGGACUCGG____________ACUCGGAUUCACAUUCGGAUCCACACCCACCACAUGCCCA
(((((.(((((((((...((....(((((........)))))))..))))................((((((......)))))).....))))).))))).. (-23.95 = -24.32 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:10 2006