Locus 6091

Sequence ID 2L_DroMel_CAF1
Location 17,089,987 – 17,090,107
Length 120
Max. P 0.884811
window9690 window9691

overview

Window 0

Location 17,089,987 – 17,090,091
Length 104
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 84.78
Mean single sequence MFE -20.27
Consensus MFE -15.75
Energy contribution -16.08
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.28
Structure conservation index 0.78
SVM decision value 0.45
SVM RNA-class probability 0.739914
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17089987 104 + 22407834
GCAAUAAAUACAUCAACAAUUCAUGAUUAUUUGAUAUAAAUAAUUGCAUUUUGUUAUGUGCCAAAUUAAAAUGAAAUGCCAUCAUCAUUUCUGAUGGCAUGUCA
........(((((.(((((.....(((((((((...))))))))).....))))))))))...........(((.(((((((((.......))))))))).))) ( -24.00)
>DroPse_CAF1 44787 88 + 1
---------------ACGAU-UAUGUAUAGUGGAUAUAAAUAAUGGCAUUUGGCUAUGUGCAAAAUUAAAAUGAAAUGCCAUCAUCAUUUUUGAUGCCAUGUCA
---------------.....-........((((.........(((((((((.((.....))............)))))))))(((((....))))))))).... ( -16.92)
>DroSec_CAF1 53731 104 + 1
GCAAUAAAUACAUCAACGAUUCAUAAAUAUUUGAUAUAAAUAAUUGCAUUUUGUUAUGUGCCAAAUUAAAAUGAAAUGCCAUCAUCAUUUCUGAUGGCAUGUCA
........(((((.(((((....(((.((((((...)))))).)))....))))))))))...........(((.(((((((((.......))))))))).))) ( -20.80)
>DroEre_CAF1 55118 104 + 1
GCAAUAAAUACAUCAACAAUCCAUGAAUAUUUGAUAUAAAUAAUUGCAUUUUGUUAUGUGCCAAAUUAAAAUGAAAUGCCAUCAUCAUUUCUGAUGGCAUGUCA
........(((((.(((((...(((..((((((...))))))....))).))))))))))...........(((.(((((((((.......))))))))).))) ( -21.10)
>DroYak_CAF1 54159 104 + 1
GCAAUAAAUACAUCAACGAUUCAUGAAUAUUUGAUAUAAGUAAUUGCAUUUUGUUAUGUGCCAAAUUAAAAUGAAAUGCCAUCAUCAUUUUUGAUGGCAUGUCA
((((((..((.(((((..(((....)))..))))).))..).)))))........................(((.(((((((((.......))))))))).))) ( -21.90)
>DroPer_CAF1 43178 88 + 1
---------------ACGAU-UAUGUAUAGUGGAUAUAAAUAAUGGCAUUUGGCUAUGUGCAAAAUUAAAAUGAAAUGCCAUCAUCAUUUUUGAUGCCAUGUCA
---------------.....-........((((.........(((((((((.((.....))............)))))))))(((((....))))))))).... ( -16.92)
>consensus
GCAAUAAAUACAUCAACGAUUCAUGAAUAUUUGAUAUAAAUAAUUGCAUUUUGUUAUGUGCCAAAUUAAAAUGAAAUGCCAUCAUCAUUUCUGAUGGCAUGUCA
........................................((((.((((........))))...))))...(((.(((((((((.......))))))))).))) (-15.75 = -16.08 +   0.33)

alignment

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secondary structure

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dotplot

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Window 1

Location 17,090,015 – 17,090,107
Length 92
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 92.40
Mean single sequence MFE -19.55
Consensus MFE -15.35
Energy contribution -16.18
Covariance contribution 0.83
Combinations/Pair 1.00
Mean z-score -3.25
Structure conservation index 0.79
SVM decision value 0.93
SVM RNA-class probability 0.884811
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17090015 92 - 22407834
--CUUAAUGCCCA-ACAUUUGACAUGCCAUCAGAAAUGAUGAUGGCAUUUCAUUUUAAUUUGGCACAUAACAAAAUGCAAUUAUUUAUAUCAAAU
--.....((((..-.....(((.(((((((((.......))))))))).))).........)))).............................. ( -20.69)
>DroPse_CAF1 44799 95 - 1
GGCUCAAUGCCCAAACAUUUGACAUGGCAUCAAAAAUGAUGAUGGCAUUUCAUUUUAAUUUUGCACAUAGCCAAAUGCCAUUAUUUAUAUCCACU
((((...(((.........(((.(((.(((((.......))))).))).)))..........)))...))))....................... ( -19.11)
>DroSec_CAF1 53759 92 - 1
--CUUAAUUCCCA-ACAUUUGACAUGCCAUCAGAAAUGAUGAUGGCAUUUCAUUUUAAUUUGGCACAUAACAAAAUGCAAUUAUUUAUAUCAAAU
--........(((-(....(((.(((((((((.......))))))))).))).......))))................................ ( -17.80)
>DroEre_CAF1 55146 92 - 1
--CUUAAUGCCCA-ACAUUUGACAUGCCAUCAGAAAUGAUGAUGGCAUUUCAUUUUAAUUUGGCACAUAACAAAAUGCAAUUAUUUAUAUCAAAU
--.....((((..-.....(((.(((((((((.......))))))))).))).........)))).............................. ( -20.69)
>DroYak_CAF1 54187 92 - 1
--CUUAAUGCCCA-ACAUUUGACAUGCCAUCAAAAAUGAUGAUGGCAUUUCAUUUUAAUUUGGCACAUAACAAAAUGCAAUUACUUAUAUCAAAU
--.....((((..-.....(((.(((((((((.......))))))))).))).........)))).............................. ( -19.89)
>DroPer_CAF1 43190 95 - 1
GGCUCAAUGCCCAAACAUUUGACAUGGCAUCAAAAAUGAUGAUGGCAUUUCAUUUUAAUUUUGCACAUAGCCAAAUGCCAUUAUUUAUAUCCACU
((((...(((.........(((.(((.(((((.......))))).))).)))..........)))...))))....................... ( -19.11)
>consensus
__CUUAAUGCCCA_ACAUUUGACAUGCCAUCAAAAAUGAUGAUGGCAUUUCAUUUUAAUUUGGCACAUAACAAAAUGCAAUUAUUUAUAUCAAAU
.......((((........(((.(((((((((.......))))))))).))).........)))).............................. (-15.35 = -16.18 +   0.83)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:09 2006