Locus 6090

Sequence ID 2L_DroMel_CAF1
Location 17,089,424 – 17,089,530
Length 106
Max. P 0.979090
window9688 window9689

overview

Window 8

Location 17,089,424 – 17,089,530
Length 106
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 85.16
Mean single sequence MFE -27.84
Consensus MFE -21.22
Energy contribution -21.30
Covariance contribution 0.08
Combinations/Pair 1.12
Mean z-score -2.62
Structure conservation index 0.76
SVM decision value 1.83
SVM RNA-class probability 0.979090
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17089424 106 + 22407834
UCCAUAUGCAGGCGGAAGUGUAUACAUGUGUACGCCUGCAUGUUUUAUGACUUUUAUGUUAAAUAAAGUAUAAGUGCACGUAUUGAUAUUUUAUGA----AUAUAUUUGU--------
...(((((((((((...(((....))).....)))))))))))......((...((((((..(((((((((.((((....)))).))))))))).)----)))))...))-------- ( -29.30)
>DroSec_CAF1 53155 106 + 1
UCCAUAUGCAGGCGGAAGUGUAUACAUGUGUACGCCUGCAUGUUUUAUGACUUUUAUGCUAAAUAAAGUAUAAGUGCACGUAUUGAUCUUUUAUGA----AUAUAUUCGU--------
...(((((((((((...(((....))).....)))))))))))....((...((((((((......))))))))..)).(((((.((.....)).)----))))......-------- ( -27.10)
>DroSim_CAF1 48946 106 + 1
UCCAUAUGCAGGCGGAAGUGUAUACAUGUGUACGCCUGCAUGUUUUAUGACUUUUAUGCUAAAUAAAGUAUAAGUGCACGUAUUGAUCUUUUAUGA----AUAUAUUCGU--------
...(((((((((((...(((....))).....)))))))))))....((...((((((((......))))))))..)).(((((.((.....)).)----))))......-------- ( -27.10)
>DroEre_CAF1 54567 108 + 1
UCCAUAUGCAGGCGGAAGUGUGUACAUGUGUACGACUGCAUAUUUUAUGACUUUUAUGUUAAAUAAAGCAUAAGUGCACGUAUUGAUCUUUUAUGA----------GUAUAUACAUAU
...((((((((((....)).(((((....))))).))))))))..((((....(((((((......)))))))((((.((((.........)))).----------))))...)))). ( -26.50)
>DroYak_CAF1 53628 117 + 1
UCCAUAUGC-GACGGAAGUGUAUACAUGUGUACGACUGCAUAUUUUAUUACUUUUAUGUUAAAUAAAGCAUAAGUGCACGUAUUGAUCUGAUAUACUUGUAUGUACUUGUAUACAUAU
....(((((-.((....))))))).((((((((((.(((..............(((((((......)))))))(((((.((((.........)))).)))))))).)))))))))).. ( -29.20)
>consensus
UCCAUAUGCAGGCGGAAGUGUAUACAUGUGUACGCCUGCAUGUUUUAUGACUUUUAUGUUAAAUAAAGUAUAAGUGCACGUAUUGAUCUUUUAUGA____AUAUAUUUGU________
...(((((((((((...(((....))).....)))))))))))..((((...((((((((......))))))))....)))).................................... (-21.22 = -21.30 +   0.08)

alignment

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secondary structure

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dotplot

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Window 9

Location 17,089,424 – 17,089,530
Length 106
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 85.16
Mean single sequence MFE -19.04
Consensus MFE -12.74
Energy contribution -12.94
Covariance contribution 0.20
Combinations/Pair 1.08
Mean z-score -1.80
Structure conservation index 0.67
SVM decision value 0.07
SVM RNA-class probability 0.569280
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17089424 106 - 22407834
--------ACAAAUAUAU----UCAUAAAAUAUCAAUACGUGCACUUAUACUUUAUUUAACAUAAAAGUCAUAAAACAUGCAGGCGUACACAUGUAUACACUUCCGCCUGCAUAUGGA
--------.........(----(((((............((....(((((((((..........))))).)))).)).(((((((((((....)))........)))))))))))))) ( -18.30)
>DroSec_CAF1 53155 106 - 1
--------ACGAAUAUAU----UCAUAAAAGAUCAAUACGUGCACUUAUACUUUAUUUAGCAUAAAAGUCAUAAAACAUGCAGGCGUACACAUGUAUACACUUCCGCCUGCAUAUGGA
--------.........(----(((((...(((......((((................))))....)))........(((((((((((....)))........)))))))))))))) ( -18.99)
>DroSim_CAF1 48946 106 - 1
--------ACGAAUAUAU----UCAUAAAAGAUCAAUACGUGCACUUAUACUUUAUUUAGCAUAAAAGUCAUAAAACAUGCAGGCGUACACAUGUAUACACUUCCGCCUGCAUAUGGA
--------.........(----(((((...(((......((((................))))....)))........(((((((((((....)))........)))))))))))))) ( -18.99)
>DroEre_CAF1 54567 108 - 1
AUAUGUAUAUAC----------UCAUAAAAGAUCAAUACGUGCACUUAUGCUUUAUUUAACAUAAAAGUCAUAAAAUAUGCAGUCGUACACAUGUACACACUUCCGCCUGCAUAUGGA
.(((((((....----------((......))...)))))))...(((((((((..........)))).))))).((((((((..((((....)))).(......).))))))))... ( -17.30)
>DroYak_CAF1 53628 117 - 1
AUAUGUAUACAAGUACAUACAAGUAUAUCAGAUCAAUACGUGCACUUAUGCUUUAUUUAACAUAAAAGUAAUAAAAUAUGCAGUCGUACACAUGUAUACACUUCCGUC-GCAUAUGGA
...((((((((.((........((((.........))))(((((((((((.((((((..((......)))))))).)))).))).)))))).))))))))..(((((.-....))))) ( -21.60)
>consensus
________ACAAAUAUAU____UCAUAAAAGAUCAAUACGUGCACUUAUACUUUAUUUAACAUAAAAGUCAUAAAACAUGCAGGCGUACACAUGUAUACACUUCCGCCUGCAUAUGGA
.......................((((..................(((((((((..........))))).))))....(((((((((((....)))........)))))))))))).. (-12.74 = -12.94 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:07 2006