Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,819,722 – 1,819,835 |
Length | 113 |
Max. P | 0.927719 |
Location | 1,819,722 – 1,819,835 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 96.81 |
Mean single sequence MFE | -20.00 |
Consensus MFE | -16.16 |
Energy contribution | -17.40 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.03 |
Mean z-score | -2.31 |
Structure conservation index | 0.81 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.927719 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1819722 113 + 22407834 AUCCUCUUGUGCCCAACAAAGCAUCCGUUUGGCAAAUUUAUAUCUAUAAAUUUCGUUGUUUGCUGAUCCCAUUCCUCAGCAGUCAACCAUAAAUAUCAUAAUCCAUAUAAGCA .....((((((((.(((.........))).)))((((((((....)))))))).((((.(((((((.........))))))).))))...................))))).. ( -20.50) >DroSec_CAF1 39703 113 + 1 AUCCUCUUGUGCCCAACAAAGCAUCCGUUUGGCAGAUUUAUAUCUAUAAAUUUCGUUGUUUGCUGAUCCCAUUCCUCAGCAGUCAACCAUAAAUAACAUAAUCCAUAUAAGCA .....((((((((.(((.........))).)))((((((((....)))))))).((((.(((((((.........))))))).))))...................))))).. ( -20.60) >DroSim_CAF1 17394 113 + 1 AUCCUCUUGUGCCCAACAAAGCAUCCGUUUGGCAAAUUUAUAUCUAUAAAUUUCGUUGUUUGCUGAUCCCAUUCCUCAGCAGUCAACCAUAAAUAACAUAAUCCAUAUAAGCA .....((((((((.(((.........))).)))((((((((....)))))))).((((.(((((((.........))))))).))))...................))))).. ( -20.50) >DroEre_CAF1 28164 112 + 1 AUCCUCUGGUGCCCAACAAAGCAUCCGUUUGGCAAAUUUAUAUCUAUAAAUUUCGCUGUUUGCUGAUCCCAUUCC-CAGCAGUCAACCAUAAAUAACAUAAUCCAUAUAAGCA .......(((((........))))).(((((((((((((((....)))))))).))((.((((((..........-)))))).))......................))))). ( -19.20) >DroYak_CAF1 4477 111 + 1 AUCCUCUGGUGCCCAACAAAGCAUCCGUUUGGCAAAUUU--AUCUAUAAAUUUCGCUGUUUGCUGAUACCAUUCCUCAGCAGUCAACCAUAAAUAACAUAAUCCAUAUAAGCA .......(((((........))))).(((((((((((((--(....))))))).))((.(((((((.........))))))).))......................))))). ( -19.20) >consensus AUCCUCUUGUGCCCAACAAAGCAUCCGUUUGGCAAAUUUAUAUCUAUAAAUUUCGUUGUUUGCUGAUCCCAUUCCUCAGCAGUCAACCAUAAAUAACAUAAUCCAUAUAAGCA .....((((((((.(((.........))).)))((((((((....)))))))).((((.(((((((.........))))))).))))...................))))).. (-16.16 = -17.40 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:52 2006