Locus 6089

Sequence ID 2L_DroMel_CAF1
Location 17,088,658 – 17,088,760
Length 102
Max. P 0.727201
window9687

overview

Window 7

Location 17,088,658 – 17,088,760
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 92.39
Mean single sequence MFE -26.28
Consensus MFE -20.24
Energy contribution -20.48
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.79
Structure conservation index 0.77
SVM decision value 0.41
SVM RNA-class probability 0.727201
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17088658 102 + 22407834
AUGUCAUGGCUCUAAUGAGCUGUAUGUGUGUGAAUGUGUUCGAGAAUGUUGCAUUGUUGUUGACGUUUCAGCUGGCAUAUGAUGCUUGUUAGUGAGUUUUUC
.......((((((((..(((.((((((..((((((((...(((.((((...)))).)))...))))))..))..))))))...)))..)))..))))).... ( -23.80)
>DroSec_CAF1 52400 94 + 1
AUGUCAUGGCUCUAAUGAGCUGUAUGUGUGUG--------CGAGAAUGUUGCAUUGUUGUUGACGUUUCAGCUGGCAUAUGAUGCUUGUUAGUGAGUUUUUC
.......((((((((..(((..(((((((..(--------(..((((((((((....)).))))))))..))..)))))))..)))..)))..))))).... ( -27.30)
>DroSim_CAF1 48191 94 + 1
AUGUCAUGGCUCUAAUGAGCUGUAUGUGUGUG--------CGAGAAUGUUGCAUUGUUGUUGACGUUUCAGCUGGCAUAUGAUGCUUGUUAGUGAGUUUUUC
.......((((((((..(((..(((((((..(--------(..((((((((((....)).))))))))..))..)))))))..)))..)))..))))).... ( -27.30)
>DroEre_CAF1 53829 99 + 1
AUGUCAUGGCUCUAAUGAGCUGUGUGUGUG--UGUGUGUGCGAG-UUGUUGCAUUGUUGUUGACGUUUCAGCUGGCAUAUGAUGCUUGUUAGUGAGUUUUUC
....((((((((....)))))))).....(--(((((((((.((-(((..((.((......)).))..))))).)))))).))))................. ( -27.60)
>DroYak_CAF1 52864 102 + 1
AUGUCAUGGCUCUAAUGAGCUGUAUGUGUGGGAGUGUGUGCGAGAAUGUUGCAUUGUUGUUGACGUUUCAGCUGGCAUAUGAUGCUUGUUAGUGAGUUUUUC
.......((((((((..(((.((((((((.(((((((..((((.((((...)))).))))..))))))).))..))))))...)))..)))..))))).... ( -25.40)
>consensus
AUGUCAUGGCUCUAAUGAGCUGUAUGUGUGUG__UGUGU_CGAGAAUGUUGCAUUGUUGUUGACGUUUCAGCUGGCAUAUGAUGCUUGUUAGUGAGUUUUUC
.......((((((((..(((..(((((((............((.((((...)))).))(((((....)))))..)))))))..)))..)))..))))).... (-20.24 = -20.48 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:06 2006