| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,085,344 – 17,085,435 |
| Length | 91 |
| Max. P | 0.507205 |
| Location | 17,085,344 – 17,085,435 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 83.24 |
| Mean single sequence MFE | -19.25 |
| Consensus MFE | -11.39 |
| Energy contribution | -11.70 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.59 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.507205 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17085344 91 + 22407834 ------AUGCAAGCCAACAUGGCUUUGUAGCCUGUGCGUGUAAAUGUUUUUGAUUCUUUUAAAAUAUUUUAAUUACGGAAGUUUACACAUACUAUUU ------.((((((((.....))).)))))....(((.(((((((((((((.((....)).))))))).......((....)))))))).)))..... ( -19.00) >DroSec_CAF1 49201 88 + 1 ------AUGCAAGCCAACAUUG-UUUGCGGUCUGUGCGUGUAAAUAUUUUUGGUACUUUUAAAAUAUUUUAAUUACAAAAGUGUACAAAUACUAU-- ------.(((((((.......)-))))))....(((..(((..(((((((((......(((((....)))))...))))))))))))..)))...-- ( -15.10) >DroSim_CAF1 44789 88 + 1 ------AUGCAAGCCAACAUGG-UUUGCGGUCUGUGCGUGUAAAUAUUUUUGGUUCUUUUAAAAUAUUUUAAUUACAAAAGUUUACACAUACUAU-- ------.((((((((.....))-))))))....(((.((((((((..(((((......(((((....)))))...))))))))))))).)))...-- ( -22.20) >DroEre_CAF1 50443 92 + 1 ACUCACAUGCAAGCCGACGUGG-UUUGCGGUUCGUGCAUGUAAAUAUUUUUGCUUCUUUGAAAAUAUUUUAAUUACAAAAGUGUACACUUA--AA-- ....(((((((.((((.((...-..))))))...)))))))((((((((((........)))))))))).........((((....)))).--..-- ( -20.70) >consensus ______AUGCAAGCCAACAUGG_UUUGCGGUCUGUGCGUGUAAAUAUUUUUGGUUCUUUUAAAAUAUUUUAAUUACAAAAGUGUACACAUACUAU__ .......((((((((.....)).))))))....(((.(((((...(((((((......(((((....)))))...))))))).))))).)))..... (-11.39 = -11.70 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:02 2006