Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,082,977 – 17,083,069 |
Length | 92 |
Max. P | 0.985617 |
Location | 17,082,977 – 17,083,069 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 98.17 |
Mean single sequence MFE | -19.23 |
Consensus MFE | -18.02 |
Energy contribution | -18.22 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.83 |
Structure conservation index | 0.94 |
SVM decision value | 2.01 |
SVM RNA-class probability | 0.985617 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17082977 92 + 22407834 AAUUUUCGGUUUUGCGAUACGCGAAGA-AACUUUUGCAAUCCAAUUAAAUUCAUCGCAAGUCGAAAUCUCGUUUUGACAAUUUAUGCAUCCUU .......((...((((....((((.((-(....(((.....))).....))).))))..((((((((...))))))))......)))).)).. ( -18.80) >DroSec_CAF1 46862 92 + 1 AAUUUUCGGUUUUGCGAUACGCGAAGA-AACUUUUGCAAUCCAAUUAAAUUCAUCGCAAGUCGAAAUCUCGUUUUGACAAUUUAUGCAUCCUU .......((...((((....((((.((-(....(((.....))).....))).))))..((((((((...))))))))......)))).)).. ( -18.80) >DroSim_CAF1 42415 92 + 1 AAUUUUCGGUUUUGCGAUACGCGAAGA-AACUUUUGCAAUCCAAUUAAAUUCAUCGCAAGUCGAAAUCUCGUUUUGACAAUUUAUGCAUCCUU .......((...((((....((((.((-(....(((.....))).....))).))))..((((((((...))))))))......)))).)).. ( -18.80) >DroEre_CAF1 48077 93 + 1 AAUUUUCGGUUUUGCGAUACGCGAUGAAAACUUUUGCAAUCCAAUUAAAUACAUCGCAAGUCGAAAUCUCGUUUUGACAAUUUAUGCAUCCUU .......((...((((....((((((.......(((.....))).......))))))..((((((((...))))))))......)))).)).. ( -20.54) >DroYak_CAF1 47250 93 + 1 AAUUUUCGGUUUUGCGAUACGCGAGGAAAACUUUUGCAAUCCAAUUAAAUUCAUCGCAAGUCGAAAUCUCGUUUUGACAAUUUAUGCAUCCUU .......((...((((....((((.(((.....(((.....))).....))).))))..((((((((...))))))))......)))).)).. ( -19.20) >consensus AAUUUUCGGUUUUGCGAUACGCGAAGA_AACUUUUGCAAUCCAAUUAAAUUCAUCGCAAGUCGAAAUCUCGUUUUGACAAUUUAUGCAUCCUU .......((...((((....((((.((......(((.....)))......)).))))..((((((((...))))))))......)))).)).. (-18.02 = -18.22 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:59 2006