| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,080,481 – 17,080,576 |
| Length | 95 |
| Max. P | 0.843426 |
| Location | 17,080,481 – 17,080,576 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.84 |
| Mean single sequence MFE | -27.50 |
| Consensus MFE | -18.17 |
| Energy contribution | -18.57 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.843426 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17080481 95 + 22407834 ---------------CCUUACCAAGUGUUCCACAUCCAAUUGCCACCAUUGUUGGCGACAGAUUUUAGCCGCUUGUUAGUGGCUAACAGUGCCGUACACAAAUACAC--ACA-------- ---------------.........((((..((((((...((((((.......))))))..))).(((((((((....)))))))))..)))....))))........--...-------- ( -25.60) >DroSec_CAF1 44429 95 + 1 ---------------CCUUACCAAGUAGUCCACAUCCAAUUGCCACCAUUGUUGGCGACAGAUUUUAGCCGCUUGUUAGUGGCUAACAGUGCCGUACACAAAUACAC--ACA-------- ---------------.........(((...((((((...((((((.......))))))..))).(((((((((....)))))))))..)))...)))..........--...-------- ( -22.90) >DroSim_CAF1 39926 95 + 1 ---------------CCUUACCAAGUAGUCCACAUCCAAUUGCCACCAUUGUUGGCGACAGAUUUUAGCCGCUUGUUAGUGGCUAACAGUGCCGUACACAAAUACAC--ACA-------- ---------------.........(((...((((((...((((((.......))))))..))).(((((((((....)))))))))..)))...)))..........--...-------- ( -22.90) >DroEre_CAF1 45673 95 + 1 ---------------UCUUACCCCGUGUACGCCAACCAAUUGCCUCCAUUGUUGGCGACAGAUUUUAGCCGCUUGUUAGUGGCUAACAGUGGCGUUCACAAAUACAC--ACA-------- ---------------.........(((.((((((.....(((((.........)))))......(((((((((....)))))))))...)))))).)))........--...-------- ( -32.20) >DroYak_CAF1 44767 97 + 1 ---------------UCUUACCCCGUGUUCCACAACCAAUUGCCACGAUUGUUGGCGACAGAUUUUAGCCGCUUGUUAGUGGCUAACAGUGCCGUUCGCAAAUACACACACA-------- ---------------.........((((....((((.(((((...)))))))))(((((.(((((((((((((....))))))))).))).).).))))......))))...-------- ( -25.90) >DroPer_CAF1 32844 117 + 1 CUGGUUCCGUGCUGCUGCUCCCCCUUGUUCUGGAACCAAUUCCCACCGUUGUUGGCGACAGAUUUUAGCCGCUUGUUAGUGGCCGGCAGUGGC-UUCAUAAAUACAC--ACUCUGACGGG ......((((((..(((((.........((((...(((((..(....)..)))))...)))).....((((((....)))))).)))))..))-..........((.--....)))))). ( -35.50) >consensus _______________CCUUACCAAGUGUUCCACAACCAAUUGCCACCAUUGUUGGCGACAGAUUUUAGCCGCUUGUUAGUGGCUAACAGUGCCGUACACAAAUACAC__ACA________ ........................(((((..........((((((.......))))))......(((((((((....)))))))))..(((.....))).)))))............... (-18.17 = -18.57 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:58 2006