Locus 6082

Sequence ID 2L_DroMel_CAF1
Location 17,079,117 – 17,079,207
Length 90
Max. P 0.963373
window9676

overview

Window 6

Location 17,079,117 – 17,079,207
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 96.89
Mean single sequence MFE -18.11
Consensus MFE -16.09
Energy contribution -16.09
Covariance contribution -0.00
Combinations/Pair 1.12
Mean z-score -1.76
Structure conservation index 0.89
SVM decision value 1.55
SVM RNA-class probability 0.963373
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17079117 90 + 22407834
ACCAUGCAGAGUCACAACUGCAUAAAUUUACCACCGACUUUGCAGUUAUCAUAAGGAAAAUGUGCAGGAAAACGUCAUCUGCAUGCCAUU
..((((((((.......(((((((...........((((....)))).((.....))...)))))))..........))))))))..... ( -20.43)
>DroSec_CAF1 43048 90 + 1
ACCAUGUAGAGUCACAACUGCAUAAAUUUACCACCGACUUUGCAUUUAUCAUAAGGAAAAUGUGCAGGAAAACGUCAUCUGCAUGCCAUU
..((((((((.......((((((..((((.((......................)).))))))))))..........))))))))..... ( -17.48)
>DroSim_CAF1 38546 90 + 1
ACCAUGCAGAGUCACAACUGCAUAAAUUUACCACCGACUUUGCAUUUAUCAUAAGGAAAAUGUGCAGGAAAACGUCAUCUGCAUGCCAUU
..((((((((.......((((((..((((.((......................)).))))))))))..........))))))))..... ( -19.48)
>DroEre_CAF1 44329 90 + 1
ACCAUGCAAAGUCACAACUGCAUAAAUUUACCACCGCCUUUGCAUUUAUCAUAAGAAAAAUGUGCAGGAAAACGUCAUCUGCAUGCCAUU
..((((((.(((....))).................(((.(((((((.((....)).))))))).)))...........))))))..... ( -15.50)
>DroYak_CAF1 43346 90 + 1
ACCAUGCAAAGUCACAACUGCAUAAAUUUACCACCGACUUUGCAUUUAUCAUAAGAAAAAUGUGCAGGAAAACGUCAUCUGCAUGCCAUG
...((((((((((......................))))))))))................(((((((.........)))))))...... ( -17.65)
>consensus
ACCAUGCAGAGUCACAACUGCAUAAAUUUACCACCGACUUUGCAUUUAUCAUAAGGAAAAUGUGCAGGAAAACGUCAUCUGCAUGCCAUU
...((((((((((......................))))))))))................(((((((.........)))))))...... (-16.09 = -16.09 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:55 2006