Locus 6081

Sequence ID 2L_DroMel_CAF1
Location 17,078,110 – 17,078,210
Length 100
Max. P 0.742515
window9674 window9675

overview

Window 4

Location 17,078,110 – 17,078,210
Length 100
Sequences 3
Columns 110
Reading direction forward
Mean pairwise identity 87.23
Mean single sequence MFE -13.61
Consensus MFE -9.90
Energy contribution -10.57
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.46
Structure conservation index 0.73
SVM decision value 0.45
SVM RNA-class probability 0.742515
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17078110 100 + 22407834
ACUUUUAAAAU------ACCAUAAAACAAAGGCCGUGUACACCC---AAUUUUAUUUUAAACUUUAAAUAAAUCCCCACGAAAAUAUGGCCCCC-AAAAUGUACACAGCC
...........------.............(((.(((((((...---...(((((((........)))))))...(((........))).....-....))))))).))) ( -16.40)
>DroSim_CAF1 37537 103 + 1
ACUUUUAAAAU------ACCAUAAAACAAAGACCGUGUACACCCCCUAAGUUUAUUUUAAACUUUAAAUAAAUCCCCACGAAAAUAUGGCCCCC-AAAAUGUACACAGCC
...........------.................(((((((........((((((((........))))))))..(((........))).....-....))))))).... ( -12.90)
>DroEre_CAF1 43317 107 + 1
GCUCUUAAAAUCAAAAGCCCGUAAAACAAAGCCCGUGUACACCCC---AUUUUAUAUUAAACUUUAAAUAAAUCCCCUCGAAAAUGUGGCCCCCAAAAAUGUACACAGCC
(((.((......)).)))............((..(((((((((.(---(((((...........................)))))).))..........))))))).)). ( -11.53)
>consensus
ACUUUUAAAAU______ACCAUAAAACAAAGACCGUGUACACCCC__AAUUUUAUUUUAAACUUUAAAUAAAUCCCCACGAAAAUAUGGCCCCC_AAAAUGUACACAGCC
..................................(((((((.........(((((((........)))))))...(((........)))..........))))))).... ( -9.90 = -10.57 +   0.67)

alignment

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secondary structure

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dotplot

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Window 5

Location 17,078,110 – 17,078,210
Length 100
Sequences 3
Columns 110
Reading direction reverse
Mean pairwise identity 87.23
Mean single sequence MFE -25.60
Consensus MFE -20.60
Energy contribution -21.27
Covariance contribution 0.67
Combinations/Pair 1.08
Mean z-score -1.89
Structure conservation index 0.80
SVM decision value 0.13
SVM RNA-class probability 0.599159
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17078110 100 - 22407834
GGCUGUGUACAUUUU-GGGGGCCAUAUUUUCGUGGGGAUUUAUUUAAAGUUUAAAAUAAAAUU---GGGUGUACACGGCCUUUGUUUUAUGGU------AUUUUAAAAGU
((((((((((((((.-.....((((......))))...(((((((........)))))))...---)))))))))))))).............------........... ( -25.80)
>DroSim_CAF1 37537 103 - 1
GGCUGUGUACAUUUU-GGGGGCCAUAUUUUCGUGGGGAUUUAUUUAAAGUUUAAAAUAAACUUAGGGGGUGUACACGGUCUUUGUUUUAUGGU------AUUUUAAAAGU
(((((((((((((((-..(((((((......))))...(((((((........))))))))))..))))))))))))))).............------........... ( -25.90)
>DroEre_CAF1 43317 107 - 1
GGCUGUGUACAUUUUUGGGGGCCACAUUUUCGAGGGGAUUUAUUUAAAGUUUAAUAUAAAAU---GGGGUGUACACGGGCUUUGUUUUACGGGCUUUUGAUUUUAAGAGC
(.((((((((((((.(((...)))((((((.....((((((.....)))))).....)))))---))))))))))))).)............(((((((....))))))) ( -25.10)
>consensus
GGCUGUGUACAUUUU_GGGGGCCAUAUUUUCGUGGGGAUUUAUUUAAAGUUUAAAAUAAAAUU__GGGGUGUACACGGCCUUUGUUUUAUGGU______AUUUUAAAAGU
((((((((((((((.......((((......))))...(((((((........)))))))......)))))))))))))).............................. (-20.60 = -21.27 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:54 2006