Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,818,890 – 1,819,020 |
Length | 130 |
Max. P | 0.854498 |
Location | 1,818,890 – 1,819,006 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.50 |
Mean single sequence MFE | -26.94 |
Consensus MFE | -22.91 |
Energy contribution | -23.60 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.04 |
Mean z-score | -1.51 |
Structure conservation index | 0.85 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523772 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1818890 116 - 22407834 GGGCAAUUCCAAACAAUAAGUUGCCAUUUUACUGCCGAAUGCUUAACCUUGUCCUCAAUCGUAAAGGGAGCAUUCGACUCCCGUUUUCCCUCGC----UUUUCCUCCAGAUGUUGCCCAA (((((((..(.(((.....))).............(((((((((..((((.............)))))))))))))..................----..........)..))))))).. ( -26.62) >DroSec_CAF1 38841 116 - 1 GGGCAAUUCCAAACAAUAAGUUGCCAUUUUACUGCCGAAUGCUUAACCUUGUCCUCAAUCGUAAAGGGAGCAUUCGACUCCUGUCUUCCCUCGC----UUCUCCUCCAGAUGUAGCCCAA ((((.......(((.....))).........(((..((((((((..((((.............))))))))))))(((....))).........----........))).....)))).. ( -25.82) >DroSim_CAF1 16529 116 - 1 GGGCAAUUCCAAACAAUAAGUUGCCAUUUUACUGCCGAAUGCUUAACCUUGUCCUCAAUCGUAAAGGGAGCAUUCGACUCCUGUUUUCCCUCGC----UUUUCCUCCAGAUGUUGCCCAA (((((((..........((((.........((.(.(((((((((..((((.............))))))))))))).)....))........))----))...........))))))).. ( -26.75) >DroPer_CAF1 30587 120 - 1 AGGCAAUUCCAAACAAUAAGUUGCCAUUUUAUUGCCGAAUGCUUAACCUUGUCCCCAAUCGAAAGGGGAGCAGUCAACUCCUGAGUUGUCCCGCCCCAUGCUCCCCCAGAUGUUGCCCAA .((((((..(...(((((((.......))))))).(((.((..............)).)))...(((((((((.(((((....))))).)........))))))))..)..))))))... ( -30.74) >DroEre_CAF1 27323 116 - 1 GGGCCAUUCCAAACAAUAAGUUGCCAUUUUACUGCCGAAUGCUUAACCUUGUCCUCAAUCGCAAAGGGAGCAUUCGACUCCUGUUCUCCCACGC----UUUUCCUCCAGAUGUUGCCCAA ((((((((.........((((.........((.(.(((((((((..((((((........)).))))))))))))).)....))........))----))........))))..)))).. ( -24.26) >DroYak_CAF1 3669 116 - 1 GGGCAAUUCCAAACAAUAAGUUGCCAUUUUACUGCCGAAUGCUUAACCUUGUCCUCAAUCGCAAAGGGAGCAUUCGACUCCUGUUUUCCCUCGC----UUUUCCUCCAGAUGUUGCCCAA (((((((..........((((.........((.(.(((((((((..((((((........)).))))))))))))).)....))........))----))...........))))))).. ( -27.43) >consensus GGGCAAUUCCAAACAAUAAGUUGCCAUUUUACUGCCGAAUGCUUAACCUUGUCCUCAAUCGUAAAGGGAGCAUUCGACUCCUGUUUUCCCUCGC____UUUUCCUCCAGAUGUUGCCCAA (((((((..(.(((.....))).............(((((((((..((((.............)))))))))))))................................)..))))))).. (-22.91 = -23.60 + 0.70)
Location | 1,818,926 – 1,819,020 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.95 |
Mean single sequence MFE | -22.71 |
Consensus MFE | -19.89 |
Energy contribution | -20.25 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.05 |
Mean z-score | -1.88 |
Structure conservation index | 0.88 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.854498 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1818926 94 - 22407834 UC-CCUUUGUU-------------------------UUCCGGGCAAUUCCAAACAAUAAGUUGCCAUUUUACUGCCGAAUGCUUAACCUUGUCCUCAAUCGUAAAGGGAGCAUUCGACUC ..-........-------------------------.....(((((((..........)))))))..........(((((((((..((((.............))))))))))))).... ( -21.82) >DroSec_CAF1 38877 94 - 1 UC-CCUUUGUU-------------------------UUCCGGGCAAUUCCAAACAAUAAGUUGCCAUUUUACUGCCGAAUGCUUAACCUUGUCCUCAAUCGUAAAGGGAGCAUUCGACUC ..-........-------------------------.....(((((((..........)))))))..........(((((((((..((((.............))))))))))))).... ( -21.82) >DroSim_CAF1 16565 94 - 1 UC-CCUUUGUU-------------------------UUCCGGGCAAUUCCAAACAAUAAGUUGCCAUUUUACUGCCGAAUGCUUAACCUUGUCCUCAAUCGUAAAGGGAGCAUUCGACUC ..-........-------------------------.....(((((((..........)))))))..........(((((((((..((((.............))))))))))))).... ( -21.82) >DroPer_CAF1 30627 120 - 1 CUACCAUGGUUUUUUUGUAUUCUGUGGCCAACACAAUUCCAGGCAAUUCCAAACAAUAAGUUGCCAUUUUAUUGCCGAAUGCUUAACCUUGUCCCCAAUCGAAAGGGGAGCAGUCAACUC .......((((.....((((((((((.....))))......((((((......(((....))).......))))))))))))..))))((((((((........))))).)))....... ( -29.92) >DroEre_CAF1 27359 93 - 1 UC--CUUUGUU-------------------------UUCCGGGCCAUUCCAAACAAUAAGUUGCCAUUUUACUGCCGAAUGCUUAACCUUGUCCUCAAUCGCAAAGGGAGCAUUCGACUC ..--..(((((-------------------------(...(((....)))))))))...................(((((((((..((((((........)).))))))))))))).... ( -18.40) >DroYak_CAF1 3705 94 - 1 UC-CCUUUGUU-------------------------UUCCGGGCAAUUCCAAACAAUAAGUUGCCAUUUUACUGCCGAAUGCUUAACCUUGUCCUCAAUCGCAAAGGGAGCAUUCGACUC ..-........-------------------------.....(((((((..........)))))))..........(((((((((..((((((........)).))))))))))))).... ( -22.50) >consensus UC_CCUUUGUU_________________________UUCCGGGCAAUUCCAAACAAUAAGUUGCCAUUUUACUGCCGAAUGCUUAACCUUGUCCUCAAUCGUAAAGGGAGCAUUCGACUC .........................................(((((((..........)))))))..........(((((((((..((((.............))))))))))))).... (-19.89 = -20.25 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:51 2006