Locus 6079

Sequence ID 2L_DroMel_CAF1
Location 17,077,272 – 17,077,383
Length 111
Max. P 0.988961
window9670 window9671

overview

Window 0

Location 17,077,272 – 17,077,383
Length 111
Sequences 4
Columns 115
Reading direction forward
Mean pairwise identity 94.67
Mean single sequence MFE -30.40
Consensus MFE -27.64
Energy contribution -27.26
Covariance contribution -0.38
Combinations/Pair 1.06
Mean z-score -2.12
Structure conservation index 0.91
SVM decision value 1.29
SVM RNA-class probability 0.938568
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17077272 111 + 22407834
GUGUGUGAGUGUAGUUAAGGCUUUAUCUGAGGGGUGCCAAACCAGAGACACCCUACAAAGGCAACAACAGCAUGCGACAAAUAUUUAACAUUG-GCAUAUUUUUCACACACA---
(((((((((.((.(((...(((((...((.((((((.(........).)))))).)))))))...))).))((((..................-))))....))))))))).--- ( -31.77)
>DroSec_CAF1 41204 110 + 1
GUGUGUGAGUGUAGUUAAGGCUUUAUCUGAGGGGUGCCAAACCAGAGACACCCUACAAAAGCAACAACAGCAUGCGACAAAUAUUUAACAUUGGGCAUAUUUUUCACACA-----
.((((((((.((.(((...(((((...((.((((((.(........).)))))).)))))))...))).))((((..(((..........))).))))....))))))))----- ( -29.40)
>DroSim_CAF1 36697 109 + 1
GUGUGUGAGUGUAGUUAAGGCUUUAUCUGAGGGGUGCCAAACCAGAGACACCCUACAAAAGCAACAACAGCAUGCGACAAAUAUUUAACAUUG-GCAUAUUUUUCACACA-----
.((((((((.((.(((...(((((...((.((((((.(........).)))))).)))))))...))).))((((..................-))))....))))))))----- ( -27.87)
>DroEre_CAF1 40950 114 + 1
GUGUGUGAGUGUAGUUAAGGCUUUAUCUGAGGGGUGCCAAACCAGGGACACCCUGCAAGAGCUACAACAGCAUGCGACAAAUAUUUAACAUUG-GCAUAUUUUUCACACAAACAC
.((((((((.((.(((..((((((...((.((((((((.......)).)))))).))))))))..))).))((((..................-))))....))))))))..... ( -32.57)
>consensus
GUGUGUGAGUGUAGUUAAGGCUUUAUCUGAGGGGUGCCAAACCAGAGACACCCUACAAAAGCAACAACAGCAUGCGACAAAUAUUUAACAUUG_GCAUAUUUUUCACACA_____
.((((((((.((.(((...(((((...((.((((((.(........).)))))).)))))))...))).))((((...................))))....))))))))..... (-27.64 = -27.26 +  -0.38)

alignment

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secondary structure

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dotplot

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Window 1

Location 17,077,272 – 17,077,383
Length 111
Sequences 4
Columns 115
Reading direction reverse
Mean pairwise identity 94.67
Mean single sequence MFE -32.98
Consensus MFE -30.58
Energy contribution -31.07
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.76
Structure conservation index 0.93
SVM decision value 2.14
SVM RNA-class probability 0.988961
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17077272 111 - 22407834
---UGUGUGUGAAAAAUAUGC-CAAUGUUAAAUAUUUGUCGCAUGCUGUUGUUGCCUUUGUAGGGUGUCUCUGGUUUGGCACCCCUCAGAUAAAGCCUUAACUACACUCACACAC
---.((((((((....(((((-(((..........)))..)))))..((((..((.((((..(((((((........)))))))..))))....))..)))).....)))))))) ( -33.00)
>DroSec_CAF1 41204 110 - 1
-----UGUGUGAAAAAUAUGCCCAAUGUUAAAUAUUUGUCGCAUGCUGUUGUUGCUUUUGUAGGGUGUCUCUGGUUUGGCACCCCUCAGAUAAAGCCUUAACUACACUCACACAC
-----(((((((....(((((.(((..........)))..)))))..((((..(((((((..(((((((........)))))))..))))...)))..)))).....))))))). ( -33.60)
>DroSim_CAF1 36697 109 - 1
-----UGUGUGAAAAAUAUGC-CAAUGUUAAAUAUUUGUCGCAUGCUGUUGUUGCUUUUGUAGGGUGUCUCUGGUUUGGCACCCCUCAGAUAAAGCCUUAACUACACUCACACAC
-----(((((((....(((((-(((..........)))..)))))..((((..(((((((..(((((((........)))))))..))))...)))..)))).....))))))). ( -32.70)
>DroEre_CAF1 40950 114 - 1
GUGUUUGUGUGAAAAAUAUGC-CAAUGUUAAAUAUUUGUCGCAUGCUGUUGUAGCUCUUGCAGGGUGUCCCUGGUUUGGCACCCCUCAGAUAAAGCCUUAACUACACUCACACAC
((((..(((((......((..-..))(((((...(((((((((.((((...))))...))).(((((((........)))))))....))))))...))))))))))..)))).. ( -32.60)
>consensus
_____UGUGUGAAAAAUAUGC_CAAUGUUAAAUAUUUGUCGCAUGCUGUUGUUGCUUUUGUAGGGUGUCUCUGGUUUGGCACCCCUCAGAUAAAGCCUUAACUACACUCACACAC
.....(((((((....(((((..(((((...)))))....)))))..((((..(((((((..(((((((........)))))))..))))...)))..)))).....))))))). (-30.58 = -31.07 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:50 2006