Locus 6078

Sequence ID 2L_DroMel_CAF1
Location 17,073,924 – 17,074,044
Length 120
Max. P 0.583226
window9669

overview

Window 9

Location 17,073,924 – 17,074,044
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.67
Mean single sequence MFE -32.54
Consensus MFE -31.05
Energy contribution -31.05
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.16
Structure conservation index 0.95
SVM decision value 0.10
SVM RNA-class probability 0.583226
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17073924 120 - 22407834
ACGACGCUUCACGUCGGUCUGCUUUGCCACUUUUCACUGUGUCCUUCCGUUUUCCUUUGGUGAUGGAGGUCUUGGUCUUGGCUUAAAGCAUUUUACACUUGCCAUUAACGUGGCUCCGCG
.(((((.....)))))....((...(((((.....((((.(.(((.(((((..((...)).)))))))).).))))..((((..................)))).....)))))...)). ( -32.87)
>DroSec_CAF1 37865 120 - 1
ACGACGCUUCACGUCGGUCUGCUUUGCCACUUUCCACUGUGUCCUUCCGUUUUCCUUGGCUGAUGGAGGUCUUGGUCUUGGCUUAAAUUAUUUUACACUUGCCAUUAACGUGGCUCCGCG
.(((((.....)))))....((...(((((...(((....(.(((.(((((..(....)..)))))))).).)))...((((..................)))).....)))))...)). ( -33.47)
>DroSim_CAF1 33137 120 - 1
ACGACGCUUCACGUCGGUCUGCUUUGCCACUUUUCACUGUGUCCUUCCGUUUUCCUUUGCUGAUGGAGGUCUUGGUCUUGGCUUAAAGCAUUUUACACUUGCCAUUAACGUGGCUCCGCG
.(((((.....)))))....((...(((((.....((((.(.(((.(((((..........)))))))).).))))..((((..................)))).....)))))...)). ( -31.57)
>DroEre_CAF1 37267 120 - 1
ACGACGCUUCACGUCGGUCUGCUUUGCCACUUUCCUCUGUGUCCUUCCGUUUUCCUUUGCUGAUGGAGGUCUUGGUCUUGGCUUAAAGCAUUUUACACUUGCCAUUAACGUGGCUCCGCG
.(((((.....)))))...((((((((((....((.....(.(((.(((((..........)))))))).)..))...))))..))))))..........(((((....)))))...... ( -32.40)
>DroYak_CAF1 37626 120 - 1
ACGACGCUUCACGUCGGUCUGCUUUGCCACUUUCCUCUGUGUCCUUCCGUUUUCCUUUGCUGAUGGAGGUCUUGGUCUUGGCUUAAAGCAUUUUACACUUGCCAUUAACGUGGCUCCGCG
.(((((.....)))))...((((((((((....((.....(.(((.(((((..........)))))))).)..))...))))..))))))..........(((((....)))))...... ( -32.40)
>consensus
ACGACGCUUCACGUCGGUCUGCUUUGCCACUUUCCACUGUGUCCUUCCGUUUUCCUUUGCUGAUGGAGGUCUUGGUCUUGGCUUAAAGCAUUUUACACUUGCCAUUAACGUGGCUCCGCG
.(((((.....)))))....((...(((((.............((((((((..(....)..)))))))).....((..((((..................))))...)))))))...)). (-31.05 = -31.05 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:48 2006