Locus 6077

Sequence ID 2L_DroMel_CAF1
Location 17,073,245 – 17,073,362
Length 117
Max. P 0.500000
window9668

overview

Window 8

Location 17,073,245 – 17,073,362
Length 117
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 90.12
Mean single sequence MFE -23.35
Consensus MFE -15.89
Energy contribution -16.93
Covariance contribution 1.04
Combinations/Pair 1.16
Mean z-score -2.17
Structure conservation index 0.68
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17073245 117 - 22407834
GCAUGCCAAAAAUAUAUACCCAAAUCAGGAUCAUCCUUG-GCUUUUGGUUAUUUUUGGCCUGCCAAAUCCAUGUCAUGUUUAAAUUGCAACAGCGCAAAACGAACA-AAAAUCUUUUUA
(((.((((((((((...(((.((((((((......))))-).))).))))))))))))).))).............(((((...((((......))))...)))))-............ ( -28.20)
>DroSec_CAF1 37191 115 - 1
GCAUGGCAAAAAUAUACACCCAA---AGGAUCAUCCUUG-GCUUUUUGGUAUUUUUGGCCUGCCAAAUCCAUGUCAUGUUUAAAUUGCAACAGCGCAAAACGAACACAAAAUCUUUUUA
((((((((...........((((---.((.....)))))-).....(((....(((((....))))).))))))))))).....((((......))))..................... ( -24.80)
>DroSim_CAF1 32463 118 - 1
GCAUGCCAAAAAUAUACACCCAAAUCAGGAUCAUCCUUG-GCUUUUUGUUAUUUUUGGCCUGCCAAAUCCAUGUCAUGUUUAAAUUGCAACAGCGCAAAACGAACACAAAAUCUUUUUA
(((.((((((((((.(((...((..((((......))))-..))..))))))))))))).))).............(((((...((((......))))...)))))............. ( -26.20)
>DroEre_CAF1 36545 118 - 1
GCGUGCCAAAAAUAUCCACCCAAAUCAGGAUCAUCCUUAUGCUUUUUGUUAUUUUAGGUCUGCCAAAUUCAUGUCAUGUUAAAAUGGCAACAAGCCCAAGCGAACG-AAAAUCUUUUUA
(((.(((.((((((.........((.(((.....))).)).........)))))).))).)))....(((.((((((......))))))....((....))....)-)).......... ( -20.17)
>DroYak_CAF1 36850 118 - 1
GCAUGCCAAAAAUAUCCACCCAAAUCAGGAUCAUCCUUAUGCUUUUUGUUAUUUUUGGUCUGCCAAAUCCAUGUCACCUUAAAAUAGCAACAGCCCAAAACGAACA-AAAAUCUUUUUA
(((.((((((((((.........((.(((.....))).)).........)))))))))).))).......................((....))............-............ ( -17.37)
>consensus
GCAUGCCAAAAAUAUACACCCAAAUCAGGAUCAUCCUUG_GCUUUUUGUUAUUUUUGGCCUGCCAAAUCCAUGUCAUGUUUAAAUUGCAACAGCGCAAAACGAACA_AAAAUCUUUUUA
(((.((((((((((............(((.....)))............)))))))))).))).............(((((...((((......))))...)))))............. (-15.89 = -16.93 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:47 2006