Locus 6072

Sequence ID 2L_DroMel_CAF1
Location 17,067,711 – 17,067,812
Length 101
Max. P 0.518012
window9657

overview

Window 7

Location 17,067,711 – 17,067,812
Length 101
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 87.57
Mean single sequence MFE -32.47
Consensus MFE -19.80
Energy contribution -19.96
Covariance contribution 0.16
Combinations/Pair 1.05
Mean z-score -2.63
Structure conservation index 0.61
SVM decision value -0.03
SVM RNA-class probability 0.518012
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17067711 101 + 22407834
CACACAAUAGUCGUCCUUCUC----UCUACC-CACAUCUCAUCG-CAGUUUGCUCCUGUCCAAAGUGCAGCUGAGAUUGAGGCAAGGUCCACCUGACUUGAUCAGUG
.........((.(.((((.((----((....-...((((((.((-((.((((........)))).))).).)))))).)))).)))).).))((((.....)))).. ( -22.60)
>DroSec_CAF1 31708 105 + 1
CACACAAUAGUUGUCCUUCUCUGUCUCUCCC-CACAUCUCAGCG-CAGUUUGCUCCUGUCCAAAAUGCAGCUGAGAUUGAGGCAAGGUCCACCUGACUUGAUCAGUG
..(((.......(((......((((((....-...(((((((((-((.((((........)))).))).)))))))).))))))(((....)))))).......))) ( -28.34)
>DroSim_CAF1 26983 103 + 1
CACAC--UAGUCGUCCUUCUCUGUCUCUCCC-CACAUCUCAGCG-CAGUUUGCUCCUGUCCAAAGUGCAGCUGAGAUUGAGGCAAGGUCCACCUGACUUGAUCAGUG
..(((--(.((((((......((((((....-...(((((((((-((.((((........)))).))).)))))))).))))))(((....))))))..))).)))) ( -34.00)
>DroEre_CAF1 31332 98 + 1
CAC----UAGCCGUCCUUCUC----UCUUGC-CACAUCUCAGCUUCAGCUUGCUCCUGUCCAAACUGCGGCUGAGAUUGAGGCAAGGGCCACCUGACUUGAUCAGUG
(((----(..(.(((.....(----((((((-(.((((((((((.(((.(((........))).))).)))))))).)).))))))))......)))..)...)))) ( -34.90)
>DroYak_CAF1 30438 98 + 1
CAC----UGCCCGUCCUUCUC----UCUUGCCCACAUCUCAGCG-CAGCUUGCUCCUGUCCAAGCUGCAGCUGAGAUUGAGGCAAGGCCCACCUGACUUGAUCGGUG
(((----((...(((......----(((((((((.(((((((((-(((((((........)))))))).)))))))))).))))))).......))).....))))) ( -42.52)
>consensus
CACAC__UAGUCGUCCUUCUC____UCUCCC_CACAUCUCAGCG_CAGUUUGCUCCUGUCCAAACUGCAGCUGAGAUUGAGGCAAGGUCCACCUGACUUGAUCAGUG
................................(((...(((((..((.((((........)))).))..)))))(((..((...(((....)))..))..))).))) (-19.80 = -19.96 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:36 2006