Locus 6071

Sequence ID 2L_DroMel_CAF1
Location 17,066,450 – 17,066,569
Length 119
Max. P 0.756549
window9656

overview

Window 6

Location 17,066,450 – 17,066,569
Length 119
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 95.63
Mean single sequence MFE -35.10
Consensus MFE -32.22
Energy contribution -31.98
Covariance contribution -0.24
Combinations/Pair 1.11
Mean z-score -1.25
Structure conservation index 0.92
SVM decision value 0.49
SVM RNA-class probability 0.756549
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17066450 119 - 22407834
AUAUCUUAGCGCCCACACUCCCCGUAUCCGGCAUUUUCCCACUGCGAGCUGCUCUGCGGCUGCAAUCAGCCAGCCAAACUUGACUGCUCUGGCGUCUGGCGUCAAGAUAAAUGCACAAG
.((((((..((((.((.....(((....)))...........(((.((((((...)))))))))....(((((.((........))..)))))))..))))..)))))).......... ( -35.00)
>DroSec_CAF1 30350 119 - 1
AUAUCUUAGCGCCCACACUCCCCGUAUCCGGCAUUUUCCCACUGCGAGCUGCUCUGUGGCUGCAAUCAGCCAGCCAAACUUGGCUGCUCUGGCGUCUGGCGUCAAGAUAAAUGCACAAG
.((((((..((((...((.(((((....)))..............((((........(((((....)))))(((((....))))))))).)).))..))))..)))))).......... ( -38.60)
>DroSim_CAF1 25288 119 - 1
AUAUCUUAGCGCCCACACUCCCCGUAUCCGGCAUUUUCCCACUGCGAGCUGCUCUGUGGCUGCAAUCAGCCAGCCAAACUUGGCUGCUCUGGCGUCUGGCGUCAAGAUAAAUGCACAAG
.((((((..((((...((.(((((....)))..............((((........(((((....)))))(((((....))))))))).)).))..))))..)))))).......... ( -38.60)
>DroEre_CAF1 30026 119 - 1
AUAUCUUAACCCCCCCAGUCCCUGUAUCCGGCAUUUUCCCACUGCGAGUUGCUCUGCGGCUGCAAUCAGCCAGCCAAACUUGGCUGCUCUGGCGUCUGGCGUCAAGAUAAAUGCACAAG
..............................((((((((....(((.((.((((..(((((((....)))))(((((....)))))))...)))).)).)))....)).))))))..... ( -32.40)
>DroYak_CAF1 29058 119 - 1
AUAUCUUAACCCCCACAGUCCCUGUAUCCGGCAUUUUCCCACUGCGAGUUGCUCUGCGGCUGCAAUCAGCCAGUCAAAUUUGGCUGCUCUGGCGUCUGGCGUCAAGAUAAAUGCACAAG
..............((((...)))).....((((((((....(((.((.((((..(((((((....)))))(((((....)))))))...)))).)).)))....)).))))))..... ( -30.90)
>consensus
AUAUCUUAGCGCCCACACUCCCCGUAUCCGGCAUUUUCCCACUGCGAGCUGCUCUGCGGCUGCAAUCAGCCAGCCAAACUUGGCUGCUCUGGCGUCUGGCGUCAAGAUAAAUGCACAAG
.((((((.(((((.........((((...((......))...))))((.((((..(((((((....)))))(((((....)))))))...)))).))))))).)))))).......... (-32.22 = -31.98 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:35 2006