Locus 6070

Sequence ID 2L_DroMel_CAF1
Location 17,065,809 – 17,065,917
Length 108
Max. P 0.996349
window9655

overview

Window 5

Location 17,065,809 – 17,065,917
Length 108
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 96.48
Mean single sequence MFE -31.48
Consensus MFE -28.62
Energy contribution -28.86
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -2.05
Structure conservation index 0.91
SVM decision value 2.69
SVM RNA-class probability 0.996349
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17065809 108 + 22407834
CGCUUGCCAAGCCAAGCCGUGCUUCGUGGUAUGCAGCAAACAUCAACAACAUUUUCCCGCUUUCCAUGAGAAGCGGGAACAACGGAAAAAUACCGCCCCCUGCUGAAA
.(((((......)))))((((((....))))))(((((...............((((((((((......))))))))))...(((.......))).....)))))... ( -32.80)
>DroSec_CAF1 29776 108 + 1
CGCUUGCCAAGCCAUGCCGUGCUUCGUGGUAUGCAGCAAACAUCAACAACAUUUUCCCGCUUUCCAUGCGAAGCGGGAACAGAGCAAAAAUACCGCCCCCUGCUGAAA
.(((.....)))(((((((.......)))))))(((((...............((((((((((......))))))))))....((.........))....)))))... ( -29.10)
>DroSim_CAF1 24702 108 + 1
CGCUUGCCAAGCCAAGCCGUGCUUCGUGGUAUGCAGCAAACAUCAACAACAUUUUCCCGCUUUCCAUGCGAAGCGGGAACAGAGCAAAAAUACCGCCCCCUGCUGAAA
.(((((......)))))((((((....))))))(((((...............((((((((((......))))))))))....((.........))....)))))... ( -30.40)
>DroEre_CAF1 29484 107 + 1
CGCUUGCCAAGCCAAGCCGUGCUUGGUGGUAUGCAGCAAACAUCAACAACAUUUUCCCGCUUUCCAUGCGAAGCGGGAGCAACGCAAAAAUACCGCC-CCUGCUGAAA
.((.((((..(((((((...))))))))))).))((((...............((((((((((......))))))))))....((.........)).-..)))).... ( -34.50)
>DroYak_CAF1 28456 108 + 1
CGCUUGCCAAGCCAAGCCGUGCUUCGUGGUAUGCAGCAAACAUCAACAACAUUUUCCCGCUUUCCAUGAGAAGCGGGAACAACGCAAAAAUACCGCCCCCUGCUGAAA
.(((((......)))))((((((....))))))(((((...............((((((((((......))))))))))....((.........))....)))))... ( -30.60)
>consensus
CGCUUGCCAAGCCAAGCCGUGCUUCGUGGUAUGCAGCAAACAUCAACAACAUUUUCCCGCUUUCCAUGCGAAGCGGGAACAACGCAAAAAUACCGCCCCCUGCUGAAA
.(((((......)))))((((((....))))))(((((...............((((((((((......))))))))))....((.........))....)))))... (-28.62 = -28.86 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:33 2006