Locus 607

Sequence ID 2L_DroMel_CAF1
Location 1,817,552 – 1,817,663
Length 111
Max. P 0.750279
window995

overview

Window 5

Location 1,817,552 – 1,817,663
Length 111
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 74.45
Mean single sequence MFE -26.32
Consensus MFE -13.57
Energy contribution -13.80
Covariance contribution 0.23
Combinations/Pair 1.42
Mean z-score -1.78
Structure conservation index 0.52
SVM decision value 0.47
SVM RNA-class probability 0.750279
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1817552 111 - 22407834
AUGGUUUUGGGCAUUCCAGCACUCACUGCAAAAAUGCAAAUAUUAAAACU---AUGAAU------GUGAGUGCUCUUUUCCCACCCUUUAAUCCUUACUGCUGGUGAGUCCUUAAUCCCU
..((((..((((.....(((((((((((((....))))....(((.....---.)))..------))))))))).......((((.................)))).))))..))))... ( -27.23)
>DroPse_CAF1 3905 110 - 1
CUCGAC--AUGCAUUCC--CAUCCGUCGCAAAAAUGCAAAUAUUGAUAUAGUUAUGAUUGCGAAUGCGAAUGCUCCC---GCGUCAUU---UCCAUUCUGCUGGGAAAUCCUUAAUCCGU
......--..((((((.--(((...((((((..(((....(((....)))..)))..))))))))).))))))((((---(((.....---.......))).)))).............. ( -21.90)
>DroSec_CAF1 37502 114 - 1
AAGGUUUUGGGCAUUCCAGCAGUCACAGCAAAAAUGCAAAUAUUAAAACUGUUAUGAGU------GUGAGUGCUCCUUUCCCACCCUUUAAUUCUCUCUGCUGGCGAGUCCUUAAUCCCU
..((((..((((...(((((((((((.(((....)))..........(((......)))------))))(((.........))).............)))))))...))))..))))... ( -27.10)
>DroSim_CAF1 15154 114 - 1
AUGGUUUUGGGCAUUCCAGCACUCACUGCAAAAAUGCAAAUAUUAAAACUGUUAUGAGU------GUGAGAGCUCCUUUCCCACCCUUUAAUUCUCUCUGCUGGCGAGUCCUUAAUCCCU
..((((..((((...((((((((((.((((....))))((((.......)))).)))))------..(((((.....................))))).)))))...))))..))))... ( -26.90)
>DroEre_CAF1 26018 97 - 1
AUGGGUUUGGACAUUCCAGCACUCACUGCGAAAAUGCAAAUAUUAAAACUGUUAUGAAU------GUGAGUGCUACUUUCC-----------------CGCUGGUGAGUCCUUAAUCCUU
..(((((.((((.....((((((((((((......)))((((.......))))......------)))))))))....(((-----------------(...)).))))))..))))).. ( -27.00)
>DroYak_CAF1 2306 118 - 1
AU--AUUUGGACAUUCCAGCACUCACUGCACAAAUGUAAAUAUUAAAACUGUUAUGAAUGCGAGUGUGAGUGCUACUUUUCCACACUUUAAUCCUCACCGCUGGUGAGUCCUUAAUCCUU
..--....((((.....(((((((((((((....)))).........(((((.......)).))))))))))))....................(((((...)))))))))......... ( -27.80)
>consensus
AUGGUUUUGGGCAUUCCAGCACUCACUGCAAAAAUGCAAAUAUUAAAACUGUUAUGAAU______GUGAGUGCUCCUUUCCCACCCUUUAAUCCUCUCUGCUGGUGAGUCCUUAAUCCCU
........((((.....(((((((((.(((....)))...........(......).........)))))))))..................((........))...))))......... (-13.57 = -13.80 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:49 2006