Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,060,838 – 17,060,931 |
Length | 93 |
Max. P | 0.993108 |
Location | 17,060,838 – 17,060,931 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 80.37 |
Mean single sequence MFE | -25.22 |
Consensus MFE | -17.00 |
Energy contribution | -18.69 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.19 |
Mean z-score | -2.73 |
Structure conservation index | 0.67 |
SVM decision value | 2.37 |
SVM RNA-class probability | 0.993108 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17060838 93 + 22407834 CAUUUUCUCAAUUGUUGAUAAAGUUCCGAAAAAUAGUUGG-----------GAAAGCAGGCCGUAAAAAUGGCCAAUGGAAAUUUGUCCGGCAGCGAGAAAGAU ..(((((((..(((((((((((.(((((.......(((..-----------...))).((((((....))))))..))))).))))).)))))).))))))).. ( -29.40) >DroSec_CAF1 24921 93 + 1 CAUUUUCUCAAUUGUUGAUAAAGUUUCGAAAAAUAGUUUA-----------GAAAGCCGGCCGUAAAAAUGGCCAAUGGAAAUUUGUCCAGCAGCGAGAAAGAU ..(((((((..((((((...(((((((........(((..-----------...))).((((((....))))))....)))))))...)))))).))))))).. ( -25.80) >DroSim_CAF1 19736 92 + 1 CAUUUUCUCAAUUGUUGAUAAAGUUCCGAAAAAUAGU-UG-----------GAAAGCCGGCCGUAAAAAUGGCCAAUGGAAAUUUGUCCAGCAGCGAGAAAGAU ..(((((((..(((((((((((.(((((.......((-(.-----------...))).((((((....))))))..))))).))))).)))))).))))))).. ( -30.90) >DroYak_CAF1 22586 103 + 1 CAUUCUCUCAAUUGUUUCAAAAGUUCCGAAGAAUAGUUUAGGCAUUUUUCCCAAAGCAGGCUGUAAAAAGGCCCAACAGAAAUAUGCACAUCACGG-UGAAGGU ............((((((....(((..(((((((.((....)))))))))....))).((((.......)))).....))))))..(((......)-))..... ( -14.80) >consensus CAUUUUCUCAAUUGUUGAUAAAGUUCCGAAAAAUAGUUUA___________GAAAGCAGGCCGUAAAAAUGGCCAAUGGAAAUUUGUCCAGCAGCGAGAAAGAU ..(((((((...((((((((((.(((((.......((((..............)))).((((((....))))))..))))).)))))).))))..))))))).. (-17.00 = -18.69 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:32 2006