| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,059,684 – 17,059,802 |
| Length | 118 |
| Max. P | 0.865263 |
| Location | 17,059,684 – 17,059,802 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.50 |
| Mean single sequence MFE | -40.37 |
| Consensus MFE | -31.06 |
| Energy contribution | -32.62 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.865263 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17059684 118 + 22407834 AUCAGCACUUGGAUUUUCCGAGUGCAGCUGGUCAACAUAUUCAAGUUGAAAACAAAUUAAGUAGGCUUAGAACGGGAAGCUGCCAGCGGAGUGUUC--UGUUCUGUGUUCUGUGUCAGCU ....((((((((.....))))))))(((((((((((........)))))............(((((.((((((((((.(((.(....).))).)))--))))))).).))))..)))))) ( -41.50) >DroSec_CAF1 23762 120 + 1 AUCAGCACUUGGAUUUCCCGAGUGCAGCUGGUCAACAUUUCCAAGUUGAAAACAAAUUAAGUGGGCUUAGAGCAGGAAGCUGCCGGCGGAGUGAGCAAUGGACCCUGUUCUGUGUCAGCU ....((((((((.....))))))))((((..(((((........)))))..............(((.(((((((((...(((...((.......))..)))..))))))))).))))))) ( -40.00) >DroSim_CAF1 18576 120 + 1 AUCAGCACUUGGAUUUCCCGAGUGCAGCUGGUCAACAUUUUCAAGUUGAAAACAAAUUAAGUGGGCUUAGAGCAGGAAGCUGCCGGCGGAGUGAGCAAUGGGCCCUGUUCUGUGUCAGCU ....((((((((.....))))))))(((((.(((((........)))))..(((........((((((((.((((....))))).((.......))..))))))).......)))))))) ( -43.06) >DroEre_CAF1 23450 116 + 1 AUCAGCACUUGUGUUUCCCGAGUGCAGCUGGUCAACCUAUUCAAGUUGAAAACAAAUUAAGUGGGCUCAGAGCAGGAAGCCGUCGGCG----GAGCACUGGGCCCAGUUCUGUGCCAGCU ....(((((((.......)))))))(((((((((((........)))))..(((....((.(((((((((.((.....(((...))).----..)).))))))))).)).))).)))))) ( -45.10) >DroYak_CAF1 21461 120 + 1 AUCAGCACAUGGAUUUCCCGAGUGCAGCUGGUCAACAUUUUCAAGUUGAAAACAAAUUAAGUGGGCUUAAAGCAGGAAGCAGCCGGGGAAGUGAGCAAUGGGCCCUGUUCUGUGUCAGAU ....((((.(((.....))).)))).(((..(((((........))))).......(((((....))))))))..((.((((.(((((..((.....))...)))))..)))).)).... ( -32.20) >consensus AUCAGCACUUGGAUUUCCCGAGUGCAGCUGGUCAACAUUUUCAAGUUGAAAACAAAUUAAGUGGGCUUAGAGCAGGAAGCUGCCGGCGGAGUGAGCAAUGGGCCCUGUUCUGUGUCAGCU ....((((((((.....))))))))((((..(((((........)))))..............(((.(((((((((..(((....((.......))....)))))))))))).))))))) (-31.06 = -32.62 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:31 2006