Locus 6065

Sequence ID 2L_DroMel_CAF1
Location 17,052,136 – 17,052,256
Length 120
Max. P 0.604009
window9648

overview

Window 8

Location 17,052,136 – 17,052,256
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.00
Mean single sequence MFE -27.15
Consensus MFE -24.64
Energy contribution -24.56
Covariance contribution -0.08
Combinations/Pair 1.09
Mean z-score -1.30
Structure conservation index 0.91
SVM decision value 0.14
SVM RNA-class probability 0.604009
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17052136 120 + 22407834
CAGUUGUGCUCGCAGACAACUAUCGAUUGGCCUGGCUUAAAGGCGCAGAUGUAGCCAAGUCAAAGAUGCCAGGGGUGGAAAAAUAAGAAAAAAUAAACUUUUGCUAAUACAAUAAUAAAA
.((((((........))))))....((((.((((((.....(((((....)).)))..(((...)))))))))((..(((..................)))..))....))))....... ( -24.97)
>DroSec_CAF1 16077 120 + 1
CAGUUGUGCUCGCAGACAACUAUCGAUUGGCCUGGCUUAAAGGCGCAGAUGUAGCCAAGUCAAAGAUGCCGGGAGUGGCAAAAUAAGAAAAAAUAAACUUUUGCUAAUACAAUAAUAAAA
.((((((........))))))....((((.((((((.....(((((....)).)))..(((...)))))))))..((((((((...............))))))))...))))....... ( -27.06)
>DroSim_CAF1 10362 120 + 1
CAGUUGUGCUCGCAGACAACUAUCGAUUGGCCUGGCUUAAAGGCGCAGAUGUAGCCAAGUCAAAGAUGCCGGGGGUGGCAAAAUAAGAAAAAAUAAACUUUUGCUAAUACAAUAAUAAAA
.((((((........))))))....((((.((((((.....(((((....)).)))..(((...)))))))))..((((((((...............))))))))...))))....... ( -27.26)
>DroEre_CAF1 15985 120 + 1
CAGUUGUGCUCGCAGACAACUAUCGAUUGGCCUGGCUUAAAGGCGCAGAUGUAGCCAAGUCAAAGAUGCUGGGGGUGGCAAAAUAAGAAAAAAUAAACUUUUGCUAAUACAAUAAUAAAA
..(((((((((.(((.((.((.....(((((((((((....))).))).....))))).....)).))))).))))(((((((...............)))))))...)))))....... ( -29.16)
>DroYak_CAF1 14066 119 + 1
CAGUUGUGCUCGCAGACAACUAUCGAUUGGCCUGGCUUAAAGGCGCAGAUGUAGCCAAGUCAAAGAUGCCGG-GGUGGCAAAGUAAGAAAAAAUAAACUUUUGCUAAUACAAUAAUAAAA
.((((((........))))))....((((.((((((.....(((((....)).)))..(((...))))))))-).(((((((((............)).)))))))...))))....... ( -27.30)
>consensus
CAGUUGUGCUCGCAGACAACUAUCGAUUGGCCUGGCUUAAAGGCGCAGAUGUAGCCAAGUCAAAGAUGCCGGGGGUGGCAAAAUAAGAAAAAAUAAACUUUUGCUAAUACAAUAAUAAAA
.((((((........))))))....((((.((((((.....(((((....)).)))..(((...)))))))))..((((((((...............))))))))...))))....... (-24.64 = -24.56 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:26 2006