Locus 6062

Sequence ID 2L_DroMel_CAF1
Location 17,050,527 – 17,050,647
Length 120
Max. P 0.521431
window9635

overview

Window 5

Location 17,050,527 – 17,050,647
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.50
Mean single sequence MFE -23.89
Consensus MFE -20.26
Energy contribution -20.54
Covariance contribution 0.28
Combinations/Pair 1.08
Mean z-score -1.24
Structure conservation index 0.85
SVM decision value -0.02
SVM RNA-class probability 0.521431
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17050527 120 - 22407834
UUUAUUAUUUUUCAAUCUGCUCCUAGGGAUCAACCUUUCCACACUAUCCCUUACCUCACUGCUGUCAUAUUUUUAUUAACUGAUAGAUUGGUUGGGUGACCCAAAAGAAGAGUGUGAGUA
(((((.(((((((............(((((...............)))))((((((.(((.((((((.............))))))...))).)))))).......)))))))))))).. ( -23.48)
>DroSec_CAF1 14447 120 - 1
UUUAUUAUUUUUCAAUCUGCUCCUAGGGAUCAACCAUUCCACACUAUCCCUUACCUCACUGCUGUCAUAUUUUUAUAAACUGAUAGAUUGGUUGGGUGACCCAAAGAAAAAGUAUGAGCA
..................((((...(((((...............)))))((((((.(((.((((((.............))))))...))).))))))................)))). ( -23.18)
>DroSim_CAF1 8731 120 - 1
UUUAUUAUUUUUCAAUCUGCUCCUAGGGAUCAACCUUUCCACACUAUCCCUUACCUCACUGCUGUCAUAUUUUUAUUAACUGAUAGAUUGGUUGGGUGACCCAAAGAAAAAGUGUGAGCA
..................((((...((((.......))))(((((.((..((((((.(((.((((((.............))))))...))).))))))......))...))))))))). ( -24.12)
>DroEre_CAF1 14342 119 - 1
UUUAUUAUUUUUCAAUCUGCUCCCAGGGAUCGACCUCUCCACACUAUCCUUUACCUCACAACUGUCAUAUUUUUAUUAACUGAUAGAUUGGUUGGGUGACC-AAGGAAAAAGGAUGAGCA
..................((((..(((......))).........(((((((.((...(((((((((.............)))))).))).((((....))-))))..))))))))))). ( -28.42)
>DroYak_CAF1 12355 120 - 1
UUUAUUAUUUUUCAAUCUGCUCCAAGGGAUCUACCUUUUUACACUAUCCCAUACCUCACUACUGACAUACUUUUAUUAACUGAUAGAUUGGUUGGGUGACCCAAGAAAAAAAUGUGAGCA
..................((((((.(((((...............))))).....((((..(..((.....((((((....))))))...))..))))).............)).)))). ( -20.26)
>consensus
UUUAUUAUUUUUCAAUCUGCUCCUAGGGAUCAACCUUUCCACACUAUCCCUUACCUCACUGCUGUCAUAUUUUUAUUAACUGAUAGAUUGGUUGGGUGACCCAAAGAAAAAGUGUGAGCA
.................(((((...(((((...............)))))((((((.(((.((((((.............))))))...))).))))))................))))) (-20.26 = -20.54 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:13 2006