Locus 606

Sequence ID 2L_DroMel_CAF1
Location 1,816,825 – 1,816,922
Length 97
Max. P 0.971760
window994

overview

Window 4

Location 1,816,825 – 1,816,922
Length 97
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 79.57
Mean single sequence MFE -22.89
Consensus MFE -11.68
Energy contribution -12.96
Covariance contribution 1.28
Combinations/Pair 1.06
Mean z-score -2.62
Structure conservation index 0.51
SVM decision value 1.68
SVM RNA-class probability 0.971760
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1816825 97 - 22407834
------UAAACAGCCGCAGACGAUGGAGACCACCACCCAAU-----CCCCUCCUGCCAUUCUCCUCC------------AAGGACCUUCGUCGUCGCUCCACUGCAGCAGCAAUUAAAUU
------......((.((.((((((((((.............-----...(....)......(((...------------..))).))))))))))((......)).)).))......... ( -22.40)
>DroSec_CAF1 36824 79 - 1
------UAAACAGCCGCAGACG----AGACCACCACCCAAU-----CUC--------------CUCC------------AAGGACCUUCCUCGUCGCUCCACUGCAGCAGCAAUUAAAUU
------......((.((.((((----((.............-----.((--------------(...------------..))).....))))))((......)).)).))......... ( -15.91)
>DroSim_CAF1 14426 97 - 1
------UAAACAGCCGCAGACGAUGGAGACCACCGCCCAAU-----CUCCUCCUGCCAUUCUCCUCC------------AAGGACCUUCCUCGUCGCUCCACUGCAGCAGCAAUUAAAUU
------......((.((.(((((.(((((...........)-----))))((((.............------------.))))......)))))((......)).)).))......... ( -21.84)
>DroEre_CAF1 25318 97 - 1
------UAAACAGCCGCAGAGGAUGGAAACCACCACCCAAU-----CUCCUCCUGCCUCUGUCCUGC------------AAGGACCUUCCUCGUCGCUCCACUGCAGCAGCAAUUAAAUU
------...((((..(((((((((((..........)))..-----.)))).))))..)))).((((------------.(((.....)))....((......)).)))).......... ( -24.50)
>DroYak_CAF1 1526 119 - 1
AACUGGUAAACAGCCGCAGACGAUGGAAACCACCACCCAUCCACCACUCGUCCUGCCAUUCUCCUUCUGCUCCAAGUAGAAGGACCUU-CUCGUCGCUCCACUGCAGCAGCAAUUAAAUU
....(((.....)))((((((((((((............))))....)))).)))).....(((((((((.....)))))))))....-...((.((......)).))............ ( -29.80)
>consensus
______UAAACAGCCGCAGACGAUGGAGACCACCACCCAAU_____CUCCUCCUGCCAUUCUCCUCC____________AAGGACCUUCCUCGUCGCUCCACUGCAGCAGCAAUUAAAUU
............((.((.((((((((......)))..........................((((...............))))......)))))((......)).)).))......... (-11.68 = -12.96 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:48 2006