Locus 6056

Sequence ID 2L_DroMel_CAF1
Location 17,045,925 – 17,046,037
Length 112
Max. P 0.545705
window9614

overview

Window 4

Location 17,045,925 – 17,046,037
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.61
Mean single sequence MFE -30.82
Consensus MFE -21.66
Energy contribution -23.42
Covariance contribution 1.76
Combinations/Pair 1.04
Mean z-score -1.66
Structure conservation index 0.70
SVM decision value 0.02
SVM RNA-class probability 0.545705
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17045925 112 - 22407834
AGAGAGAGUACUGCUGUGAUAUUUCCCGACCACGGCUGACUGGCCAGGCAACCAAGCA--------ACCCGUCGGAACACGGCACAACCGCUCCAAUGCCACUACAGCAUACAUACAUAC
.......(((.(((((((.......(((((...((((....))))..((......)).--------....))))).....((((............))))..))))))))))........ ( -30.90)
>DroSec_CAF1 10011 110 - 1
AGAGAGCGUACUGCUGUGAUAUUUCCCGACCACGGCUGACUGGCCAGGCAACCAAGCA--------ACCCGUCGGAACACGGCACAACCGCUCCGAUACCACUACACCAUACAUACAU--
.(.(((((...(((((((....((((.(((...((((....))))..((......)).--------....))))))))))))))....))))))........................-- ( -30.90)
>DroSim_CAF1 3659 110 - 1
AGAGAGCGUACUGCUGUGAUAUUUCCCGACCACGGCUGACUGGCCAGGCAACCAAGCA--------ACCCGUCGGAACACGGCACAACCGCUCCAAUACCACUACUCCAUACAUACAU--
.(.(((((...(((((((....((((.(((...((((....))))..((......)).--------....))))))))))))))....))))))........................-- ( -30.90)
>DroEre_CAF1 9801 95 - 1
AGAGAGCGCAC---UGUGAUAUUUCCCCACCACGGCUGACUGGCCAGGCAACCAAGCA--------ACCCGCCGGGACACGGCACAACCGGCCCAAUCCCACUCCA--------------
.(((....(((---((((............))))).))...((((..((......)).--------....((((.....))))......))))........)))..-------------- ( -24.20)
>DroYak_CAF1 7590 118 - 1
AGAGAGCGUACUGCUGUGAUAUUUCCCGACCACGGCUGACUGGCCAGGCAACCAAGCAACCCAGCAACCCGUCGGGACACGGCACAACCGGGCCAAUACCACUGCAGCAUAUAUACAU--
..........((((.(((.(((((((((((...((.((.((((....((......))...)))))).)).)))))))...(((........))))))).))).))))...........-- ( -37.20)
>consensus
AGAGAGCGUACUGCUGUGAUAUUUCCCGACCACGGCUGACUGGCCAGGCAACCAAGCA________ACCCGUCGGAACACGGCACAACCGCUCCAAUACCACUACACCAUACAUACAU__
.(.(((((...(((((((....((((.(((...((((....))))..((......)).............))))))))))))))....)))))).......................... (-21.66 = -23.42 +   1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:53 2006