| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,043,904 – 17,044,021 |
| Length | 117 |
| Max. P | 0.965433 |
| Location | 17,043,904 – 17,044,021 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.92 |
| Mean single sequence MFE | -28.19 |
| Consensus MFE | -24.88 |
| Energy contribution | -25.80 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.965433 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17043904 117 - 22407834 AUAAUUGUCA-ACUGAGCAUUUAAGCAGAAUAGAAAAGCUACUUGAAA--UCGUCCGGCCGGAACUCAAAUGUAGAUUUGAAAAACUAUUCAAGUGUUAAGUGCUCUGCUGACCAUGUUG ......((((-.(.((((((((((((...........))((((((((.--...(((....)))..((((((....)))))).......)))))))))))))))))).).))))....... ( -30.00) >DroSec_CAF1 8042 117 - 1 AUAAUUGUCA-ACUGAGCAUUUAAGCAGAAUAGAAAAACUACUUGAAA--UCGUCCGGCCGGAACUCAAAUGUGGAUUUGAAAAACUAUUCAAGCGUUAAGUGCUCUGCUGACCAUGUUC ......((((-.(.((((((((((((.((((((...............--...(((....)))..((((((....))))))....))))))..)).)))))))))).).))))....... ( -30.70) >DroSim_CAF1 757 117 - 1 AUAAUUGUCA-ACUGAGCAUUUAAGCAGAAUAGAAAAACUACUUGAAA--UCGUCCGGCCGGAAAGCAAAUGUAGAUUUGAAAAACUAUUCAAGCGUUAAGUGCUCUGCUGACCAUGUUC ......((((-.(.((((((((((((.((((((.....((((......--...(((....)))........))))..((....))))))))..)).)))))))))).).))))....... ( -30.43) >DroEre_CAF1 7846 120 - 1 AUAAUUGUCACACUGAGCAUUUAAGCAGCAUAGAAAAGCUAACAGAAAACCCGUCCGGCCGGAAGUCAAAUGUAGAUUCGAAAAACUAUUCAAGCGUUAAGUGCUCUGCAGACCAUGUUC ......(((.....((((((((((((......(((...(((.((....((...(((....))).))....))))).)))(((......)))..)).))))))))))....)))....... ( -23.70) >DroYak_CAF1 5570 118 - 1 AUAAUUGUCA--AUGAGCAUUUAAGCAGCAUAGAAAAGCUACCCGAAAAAUCGUCCGGCCGGAAGUCAAAUGUAGAUUUGGAAAACUAUUCAAGCGUUAAGUGCUCUGCAGACCAUGUUC ......(((.--..(((((((((((((((........)))..(((((....(((..((.(....)))..)))....)))))............)).))))))))))....)))....... ( -26.10) >consensus AUAAUUGUCA_ACUGAGCAUUUAAGCAGAAUAGAAAAGCUACUUGAAA__UCGUCCGGCCGGAACUCAAAUGUAGAUUUGAAAAACUAUUCAAGCGUUAAGUGCUCUGCUGACCAUGUUC ......((((....((((((((((((.((((((....................(((....)))..((((((....))))))....))))))..)).))))))))))...))))....... (-24.88 = -25.80 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:48 2006