Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,036,351 – 17,036,452 |
Length | 101 |
Max. P | 0.677243 |
Location | 17,036,351 – 17,036,452 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 74.61 |
Mean single sequence MFE | -28.43 |
Consensus MFE | -15.82 |
Energy contribution | -15.38 |
Covariance contribution | -0.43 |
Combinations/Pair | 1.35 |
Mean z-score | -1.86 |
Structure conservation index | 0.56 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677243 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17036351 101 + 22407834 UAAUUAAAAUUCUUAGCACGUAACUGGGUGUGUAUGGGUGGGGCUGUGGCCCACGGAUAUGCUUCUAUAUACAUACUAUAUACAUACAGCAUGUAC------AGUGC ...............(((((((.(((..((((((((((((((((....))))..(((......))).....))).)))))))))..)))....)))------.)))) ( -31.00) >DroYak_CAF1 150839 107 + 1 UAAUUAAAAUUCUUAGCACGUAACUGGGUGUGUAUGGGUGGGGCUGUGGCUCUCGGAGAUGCUCCUAUAUACAUACUAUAUACAUGCACCAUAUACAUAUAGAGUGC ...............((((....(((.(((((((((((((((((.....(((...)))..)))))((((((.....))))))...)).)))))))))).))).)))) ( -30.00) >DroAna_CAF1 134555 93 + 1 UAAUUAAAAUUCUUAGCACGUAAACGGGUGUGUUUGGGCUGGGCCGAGGAGCCCGAAGAUGCUUC-----ACAUC-CACAUAUACACAAC--------AUAAAGUGC ...............((((........((((((.((((..((((......))))((((...))))-----....)-).)).))))))...--------.....)))) ( -24.29) >consensus UAAUUAAAAUUCUUAGCACGUAACUGGGUGUGUAUGGGUGGGGCUGUGGCCCACGGAGAUGCUUCUAUAUACAUACUAUAUACAUACAACAU_UAC__AUA_AGUGC ...............((((........(((((((((....((((....))))..(((.....))).............)))))))))................)))) (-15.82 = -15.38 + -0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:46 2006