Locus 6051

Sequence ID 2L_DroMel_CAF1
Location 17,034,214 – 17,034,324
Length 110
Max. P 0.510638
window9607

overview

Window 7

Location 17,034,214 – 17,034,324
Length 110
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 82.80
Mean single sequence MFE -25.73
Consensus MFE -20.46
Energy contribution -19.88
Covariance contribution -0.58
Combinations/Pair 1.29
Mean z-score -1.32
Structure conservation index 0.80
SVM decision value -0.05
SVM RNA-class probability 0.510638
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17034214 110 + 22407834
AAGGGACCUCGUUUUGUACACGAAAAUAAUUUGUUCACAAAUUAUUGAACGCACAAAACGAGUACAGUGCGUUUCGGGAGUCUAUUGGCGUUUGUUAUUUC--ACAUAUAAG
.......((((((((((...((..(((((((((....)))))))))...)).))))))))))....(((.((..((((.(((....))).))))..))..)--))....... ( -25.60)
>DroSec_CAF1 141651 105 + 1
AAGGGACCUCGGUUUGUACACGAAAAUAAUUUGUUCACAAAUUAUUGAACGCACAAAACGAGUACAGUGCGUUUCGGGAGUCUAUUGGCAUUGGUU-------ACAUGUAAA
...((((((((.((((....))))(((((((((....)))))))))((((((((............)))))))))))).))))....((((.(...-------.)))))... ( -26.10)
>DroSim_CAF1 144822 110 + 1
AAGGGACCUCGGUUUGUACACGAAAAUAAUUUGUUCACAAAUUAUUGAACGCACAAAACGAGUACAGUGCGUUUCGGGAGUCUAUUGGCAUUUGUUAUUCC--ACAUAUAAA
..(((((((((.((((....))))(((((((((....)))))))))((((((((............)))))))))))).)))...((((....))))..))--......... ( -25.70)
>DroEre_CAF1 143062 112 + 1
AAGGGACCUCGGUUUGUACACGAAAAUAAUUUGUACACAAAUUAUUGAACGCGCACAAGUAGUACAGUGCGUUUCGGGAGGCUAUUGCCAUUUGCUAUUUCCUACAUAUACA
.((((((((((((....)).))).(((((((((....)))))))))(((.((((((..........)))))))))))..(((....))).........)))))......... ( -28.40)
>DroYak_CAF1 148642 112 + 1
AAGGGACCUCGGUUUGUACACGAAAAUAAUUUGUACACAAAUUAUUGAACGCACAAAUGGAGUACAGUGCGUUUCGCGAGUCUAUUGCCAUUUGCUAUAUCCUUCAUAAAAA
.(((((.(((.((((((...((..(((((((((....)))))))))...)).)))))).)))......(((..(.((((.....)))).)..)))....)))))........ ( -26.40)
>DroAna_CAF1 132336 97 + 1
AAGGGACUCCGGUUUUUUCUCGAAAAGAAUUUGUACACAAAUUAUUGAACGCACAA-ACGGGUACAGUGCGUUGCGGGACUGUAAUCAGAAGUGCA--------------AA
...(.((((.((((...(((((.....((((((....))))))....(((((((..-.........))))))).)))))....)))).).))).).--------------.. ( -22.20)
>consensus
AAGGGACCUCGGUUUGUACACGAAAAUAAUUUGUACACAAAUUAUUGAACGCACAAAACGAGUACAGUGCGUUUCGGGAGUCUAUUGGCAUUUGCUAUUUC__ACAUAUAAA
.......((((.............(((((((((....)))))))))((((((((............)))))))))))).(((....)))....................... (-20.46 = -19.88 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:45 2006