Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,815,761 – 1,815,864 |
Length | 103 |
Max. P | 0.663038 |
Location | 1,815,761 – 1,815,864 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 88.38 |
Mean single sequence MFE | -31.74 |
Consensus MFE | -22.87 |
Energy contribution | -24.03 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.11 |
Mean z-score | -1.88 |
Structure conservation index | 0.72 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663038 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1815761 103 + 22407834 CUCGGGGAAAUUGAAAAUGAGAACGAGAAG-----------GUCCUUUCGCACAGCUCAGCUGUGACAUUUUUAUUAAAUUUCCGCCACUUUUC-CCUCUCAGUGGGAUGUGAGU ((((((((((((...(((((((((((((..-----------....)))))((((((...))))))...)))))))).))))))).))((...((-((.......)))).))))). ( -32.30) >DroSec_CAF1 35763 104 + 1 CUCGGGGAAAUUGAAAAUGAGAACGAGAAG-----------GUCCUUUCGCACAGCUCAGCUGUGACAUUUUUAUUAAAUUUCCGCCACUUUUCCCCUCUCAGCGGGAUGUGAGU ((((((((((((...(((((((((((((..-----------....)))))((((((...))))))...)))))))).))))))).))((...(((((.....).)))).))))). ( -31.80) >DroSim_CAF1 13390 104 + 1 CUCGGGGAAAUUGAAAAUGAGAACGAGAAG-----------GUCCUUUCGCACAGCUCAGCUGUGACAUUUUUGUUAAAUUUCCGCCACUUUUCCCCUCUCAGCGGGAUGUGAGU (((((((((((((((((((....(((((..-----------....)))))((((((...)))))).)))))))....))))))).))((...(((((.....).)))).))))). ( -31.60) >DroEre_CAF1 24245 114 + 1 CUCGGGGAAAUUGAAACUGAGAACGAUAAGGAGAAGGACAAGGUCCUUCGCACAGCUCAGCUGUGACAUUUUUAUUAAAUUUCCGCCACUUU-CCCCUCUCAGCGGGAUGUGAGU ((((((((((.((...(.((((..(((((((((((((((...)))))))(((((((...)))))).).))))))))...)))).).)).)))-))))(((.....)))...))). ( -36.80) >DroYak_CAF1 488 97 + 1 CUCGGGGAAAUUGAAAAUGAGAGCG----------------GACCUUUCGCACAGCUCAGCUGUGACAUUUUUAUUAAAUUUCCGCCACUUUUUCUCUCUCAGCGGGAAGUGA-- ...((((((((((((((((...(((----------------((...)))))(((((...)))))..))))))))....)))))).))....((((((.......))))))...-- ( -26.20) >consensus CUCGGGGAAAUUGAAAAUGAGAACGAGAAG___________GUCCUUUCGCACAGCUCAGCUGUGACAUUUUUAUUAAAUUUCCGCCACUUUUCCCCUCUCAGCGGGAUGUGAGU ((((((((((((...(((((((((((((.................)))))((((((...))))))...)))))))).))))))).))((...(((((.....).)))).))))). (-22.87 = -24.03 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:47 2006